mail/bogofilter*: update pkg-descr DB support notice

mail/bogofilter*: undeprecate LMDB/KC/SQLITE

The deprecation of bogofilter-bdb wasn't under the MASTERDIR .if checks,
so inadvertently spilled over to the bogofilter (based on LMBD), -kc
(Kyoto Cabinet) and -sqlite (SQLite3) variant of the ports.
These three are supported beyond the expiration date (currently 2025-06-30).

The deprecation only refers to the bogofilter-bdb, i.e. Berkeley DB
based, port and is purely based on Oracle taking away, for instance,
old Berkeley DB 5 patches from the public non-login website,
difficulties with obtaining download URLs, and other historic material.

Reported by:	Brad Waite

mail: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  <ashish@FreeBSD.org>
  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Adam David <adam@FreeBSD.org>
  *  Adam McDougall <mcdouga9@egr.msu.edu>
  *  Adam Weinberger <adamw@FreeBSD.org>
  *  Ade Lovett <ade@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Alex Deiter <tiamat@komi.mts.ru>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alex Dupre <sysadmin@alexdupre.com>
  *  Alex Perel <veers@disturbed.net>

mail/bogofilter*: change default database

* The default version of mail/bogofilter now uses LMDB instead
  of Berkeley DB. It is not compatible and cannot read databases.

* bogofilter was renamed to bogofilter-bdb
* bogofilter-lmdb was renamed to bogofilter

* MOVED/UPDATING entries included.

math/gsl: bump portrevision of consumers after update to 2.7.1

PR:		260201

Fix CONFLICTS entries of multiple ports

There have been lots of missing CONFLICTS_INSTALL entries, either
because conflicting ports were added without updating existing ports,
due to name changes of generated packages, due to mis-understanding
the format and semantics of the conflicts entries, or just due to
typoes in package names.

This patch is the result of a comparison of all files contained in
the official packages with each other. This comparison was based on
packages built with default options and may therefore have missed
further conflicts with optionally installed files.

Where possible, version numbers in conflicts entries have been
generalized, some times taking advantage of the fact that a port

*/*: Remove redundant '-[0-9]*' from CONFLICTS_INSTALL

The conflict checks compare the patterns first against the package
names without version (as reported by "pkg query "%n"), then - if
there was no match - agsinst the full package names including the
version (as reported by "pkg query "%n-%v").

Approved by: portmgr (blanket)

Remove # $FreeBSD$ from Makefiles.

math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine

mail/bogofilter: Spell GSL_CONFIGURE_OFF correctly

There is no opt_CONFIGURE_ARGS_OFF helper.

Update bogofilter to 1.2.5.r1, add new database variants.

There are now -kc and -lmdb slave ports that use
KyotoCabinet and LMDB databases.

Since KyotoCabinet is supposed to relieve TokyoCabinet from duty,
sunset the -tc port some 15 months from now.

Clean up CONFLICTS.

Run self-tests in post-build. This reveals Berkeley DB issues
on the various RISC architectures (mips64, aarch64).

Update math/gsl to 2.5

PR:		229067

Update math/gsl to 2.4

Exp-Run by:	antoine
PR:		220408

Convert categories m* and m* to USES=sqlite and USES=firebird

mail/bogofilter-(sqlite|tc): bump these too after math/gsl lib change

PR:		192870
Submitted by:	ahktenzero

Bump PORTREVISION on all ports with USE_SQLITE=yes or USE_SQLITE=3 that
have not been bumped yet after the latest libsqlite3.so library version
change.

Approved by:	portmgr (implicit)

Support staging.

Add NO_STAGE all over the place in preparation for the staging support (cat:
mail)

Update to new upstream release 1.2.4 which basically only contained what
patches we hade in the 1.2.3 port.

Fix read-from-NULL-pointer crashes when command line option arguments
are missing from long options --syslog-tag, --timestamp-date, or
--db-cachesize (the short option equivalents were unaffected); or when
BOGODIR/BOGOFILTER_HOME/HOME environment variables are all three
missing when running bogotune. (This is all under the invoking user's
control and not believed to be security relevant.)

Reported by Alexandre Rebert, found within the Mayhem project he is with.

Obtained from:	http://svn.code.sf.net/p/bogofilter/code/trunk

Pull in patch from SVN in an attempt to fix flex-related -CURRENT build issues.

While here, fix bogofilter slave port's Makefile banners.

Update bogofilter to new upstream release 1.2.3.
Security update to fix a heap corruption bug with invalid base64 input,
reported and fixed by Julius Plenz, FU Berlin, Germany.

Feature safe:   yes
Security:       CVE-2012-5468
Security:       f524d8e0-3d83-11e2-807a-080027ef73ec

Demote CONFLICTS to CONFLICTS_INSTALL.

Bump PORTREVISION on slave ports to pull in master port bugfix for trainbogo.sh.

Update math/gsl to 1.15, and adjust PORTREVISION
and LIB_DEPENDS of dependent ports

Update to new upstream version 1.2.2. Remove now-obsolete patch.

Fix crash in base64 decoder. Pending CVE assignment from oss-security@.
Also pending vulndb entry.

Approved by:  garga (mentor, implicit)
Feature safe: yes

Switch MAINTAINER line to FreeBSD address.

Approved by: garga (mentor, implicit)

Update to new upstream release 1.2.1.

Submitted by: lwhsu@
PR:           ports/141417
Approved by:  garga@ (mentor)

Chase math/gsl update,
bump PORTREVISION

- Update to 1.2.0, resetting PORTREVISION where set.
- use bsd.database.mk framework (USE_BDB/USE_SQLITE)
- set MAKE_JOBS_SAFE for parallel builds

PR:             134323
Submitted by:   Matthias Andree <matthias.andree@gmx.de> (maintainer)

- Set CONFLICT with mail/bogofilter-tc.

PR:             127039
Submitted by:   Matthias Andree <matthias.andree@gmx.de> (maintainer)

- Fix NOPORTDOCS "make install" and packaging,
  reported by Stanislaw Halik (bcc'd to protect his mail address).
- Clean up CONFLICTS
- Run t.lock3 in bogofilter-sqlite again
- Bump port revision after pkg-plist change.

PR:             ports/87890
Submitted by:   maintainer

- Skip the overzealous t.lock3 test that is very delicate WRT timing, I/O and
  such, and broke on pointyhat and often breaks on user systems, too
- Skip t.valgrind, which is pretty environment-dependent

PR:             ports/81929
Submitted by:   maintainer

- Update to 0.94.13
  * iconv/unicode bugfixes
  * sqlite3 interface much more CPU efficient and faster now
  * bogofilter -q option to suppress printing of statistics
  (see share/doc/bogofilter/NEWS for details)
- convert WITHOUT_*/pre-everything messaging stuff (GSL, BASH) to OPTIONS
- add an OPTIONS switch for ICONV (experimental, default off),
  suggested by Yar Tikhiy.
- revise pkg-install message
- use a more suitable LIBS/CPPFLAGS passing for sibling ports or
  when GSL=off ICONV=on is used.
- change wording of GSL OPTION.
- reset -qdbm PORTREVISION
- remove obsoleted bogofilter-qdbm/files/* patches
- deprecate bogofilter-tdb effective 2005-11-30

Removed files:
- bogofilter-qdbm/files/patch-pathcycle

PR:             ports/81642
Submitted by:   maintainer

New sibling bogofilter port to use the sqlite3 database backend.

PR:             ports/81448
Submitted by:   Matthias Andree <matthias.andree@gmx.de>