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NOW FIXED. We had a known problem with lists of packages - they were out of date. The fix has been applied to production. See packages-import/issues/3 & packages-import/issues/4
Port details
metaeuk Gene discovery and annotation for large-scale eukaryotic metagenomics
7 biology on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 7Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-11-26 11:18:05
Last Update: 2025-01-29 16:56:26
Commit Hash: 50fc531
People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
License: GPLv3
WWW:
https://github.com/soedinglab/metaeuk
Description:
MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs. MetaEuk combines the fast and sensitive homology search capabilities of MMseqs2 with a dynamic programming procedure to recover optimal exons sets. It reduces redundancies in multiple discoveries of the same gene and resolves conflicting gene predictions on the same strand. MetaEuk is GPLv3-licensed open source software that is implemented in C++ and available for Linux and macOS. The software is designed to run efficiently on multiple cores.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
Collapse this list.
  1. bin/metaeuk
  2. /usr/local/share/licenses/metaeuk-7/catalog.mk
  3. /usr/local/share/licenses/metaeuk-7/LICENSE
  4. /usr/local/share/licenses/metaeuk-7/GPLv3
Collapse this list.
Dependency lines:
  • metaeuk>0:biology/metaeuk
To install the port:
cd /usr/ports/biology/metaeuk/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/metaeuk
  • pkg install metaeuk
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: metaeuk
Flavors: there is no flavor information for this port.
NOT_FOR_ARCHS: armv6 armv7 i386 mips powerpc powerpc64
distinfo:
TIMESTAMP = 1717132294 SHA256 (soedinglab-metaeuk-7-bba0d80_GH0.tar.gz) = 45eff3cb8e15626b1142d4717bf43a6e7a1308bc8a6eb1718c70d33d613898fa SIZE (soedinglab-metaeuk-7-bba0d80_GH0.tar.gz) = 13342465

Expand this list (4 items)

Collapse this list.

SHA256 (soedinglab-metaeuk-regression-f7c3999_GH0.tar.gz) = 4724516451e7d9d977c4d2edc04ab86188d5e0326f00fbc6e208df241ac0b1b3 SIZE (soedinglab-metaeuk-regression-f7c3999_GH0.tar.gz) = 6720389 SHA256 (soedinglab-MMseqs2-Regression-5e3bc17_GH0.tar.gz) = 415a7e81821c5add73c8c3b450acbd316d7244d151a306864ff3c260b115b7be SIZE (soedinglab-MMseqs2-Regression-5e3bc17_GH0.tar.gz) = 27715323

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Packages (timestamps in pop-ups are UTC):
metaeuk
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest77------
FreeBSD:13:quarterly776_1--6_26_26_2
FreeBSD:14:latest77---6_1-6_1
FreeBSD:14:quarterly77---6_26_26_2
FreeBSD:15:latest77n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. xxd : editors/vim
  2. cmake : devel/cmake-core
  3. ninja : devel/ninja
  4. perl5>=5.36<5.37 : lang/perl5.36
Test dependencies:
  1. bash : shells/bash
There are no ports dependent upon this port
Configuration Options:
No options to configure
Options name:
biology_metaeuk
USES:
cmake perl5 shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/soedinglab/metaeuk/tar.gz/7-bba0d80?dummy=/
Collapse this list.

Number of commits found: 14

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
7
29 Jan 2025 16:56:26
commit hash: 50fc531074817e776c54489bd21a0a6f8cc2fe7dcommit hash: 50fc531074817e776c54489bd21a0a6f8cc2fe7dcommit hash: 50fc531074817e776c54489bd21a0a6f8cc2fe7dcommit hash: 50fc531074817e776c54489bd21a0a6f8cc2fe7d files touched by this commit		 Piotr Kubaj (pkubaj) search for other commits by this committer 
biology/metaeuk: builds now fine on powerpc64le
7
01 Jun 2024 08:10:52
commit hash: 52d2c144f4272924d3bd18d2257c5ea2ccf68e22commit hash: 52d2c144f4272924d3bd18d2257c5ea2ccf68e22commit hash: 52d2c144f4272924d3bd18d2257c5ea2ccf68e22commit hash: 52d2c144f4272924d3bd18d2257c5ea2ccf68e22 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: update 6 → 7

Reported by:	portscout
6_2
04 Feb 2024 18:27:53
commit hash: a7caa09cefdf69a0eee4552b525128358c2ca186commit hash: a7caa09cefdf69a0eee4552b525128358c2ca186commit hash: a7caa09cefdf69a0eee4552b525128358c2ca186commit hash: a7caa09cefdf69a0eee4552b525128358c2ca186 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Broken on powerpc64le

Reported by:	fallout
6_2
16 Jan 2024 14:35:21
commit hash: 02b24eeb0152df74d1c5c949cd5eebbf7a8a6495commit hash: 02b24eeb0152df74d1c5c949cd5eebbf7a8a6495commit hash: 02b24eeb0152df74d1c5c949cd5eebbf7a8a6495commit hash: 02b24eeb0152df74d1c5c949cd5eebbf7a8a6495 files touched by this commit		 Piotr Kubaj (pkubaj) search for other commits by this committer 
biology/metaeuk: fix build on powerpc64le by disabling openmp until libomp is
fixed
6_2
12 Jan 2024 04:10:26
commit hash: d4f38349e30f8c7bcf721f440e2895ddc83309dacommit hash: d4f38349e30f8c7bcf721f440e2895ddc83309dacommit hash: d4f38349e30f8c7bcf721f440e2895ddc83309dacommit hash: d4f38349e30f8c7bcf721f440e2895ddc83309da files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Add to NOT_FOR_ARCHS, and correct BROKENxx lines
6_2
12 Jan 2024 04:03:42
commit hash: 49b7099c03fd259eac73e3337c20ed1b3999a574commit hash: 49b7099c03fd259eac73e3337c20ed1b3999a574commit hash: 49b7099c03fd259eac73e3337c20ed1b3999a574commit hash: 49b7099c03fd259eac73e3337c20ed1b3999a574 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Correct the reason in the BROKEN_xx line
6_2
12 Jan 2024 03:38:46
commit hash: 829c6082ad7b93845179d6bc2887dfafdb52c1a0commit hash: 829c6082ad7b93845179d6bc2887dfafdb52c1a0commit hash: 829c6082ad7b93845179d6bc2887dfafdb52c1a0commit hash: 829c6082ad7b93845179d6bc2887dfafdb52c1a0 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Not for 32-bit architectures

metaeuk produces wrong results there.
6_2
12 Jan 2024 03:21:22
commit hash: 6ccb05224062f9c6c152f6b0891276c0b72c122ecommit hash: 6ccb05224062f9c6c152f6b0891276c0b72c122ecommit hash: 6ccb05224062f9c6c152f6b0891276c0b72c122ecommit hash: 6ccb05224062f9c6c152f6b0891276c0b72c122e files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Broken on i386, armv7, powerpc64

Reported by:	https://portsfallout.com/
6_2
15 Jul 2023 00:31:14
commit hash: 213c779e49b95baf5968b28af26959119fec5863commit hash: 213c779e49b95baf5968b28af26959119fec5863commit hash: 213c779e49b95baf5968b28af26959119fec5863commit hash: 213c779e49b95baf5968b28af26959119fec5863 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Add NATIVE option
6_1
10 Dec 2022 09:51:02
commit hash: eee818337497110a8f4539b992607c07dc9fd1c6commit hash: eee818337497110a8f4539b992607c07dc9fd1c6commit hash: eee818337497110a8f4539b992607c07dc9fd1c6commit hash: eee818337497110a8f4539b992607c07dc9fd1c6 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Fix build on systems withour OpenMP enabled

Reported by:	fallout
6_1
03 Dec 2022 04:00:49
commit hash: 62719d0cd235f86a8441b193eabdb30c5b722b16commit hash: 62719d0cd235f86a8441b193eabdb30c5b722b16commit hash: 62719d0cd235f86a8441b193eabdb30c5b722b16commit hash: 62719d0cd235f86a8441b193eabdb30c5b722b16 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: Broken on systems where OpenMP isn't enabled

Reported by:	fallout
6_1
01 Dec 2022 23:07:21
commit hash: 467ac4a99076ae4bd66196fbce67d8a3e419dd60commit hash: 467ac4a99076ae4bd66196fbce67d8a3e419dd60commit hash: 467ac4a99076ae4bd66196fbce67d8a3e419dd60commit hash: 467ac4a99076ae4bd66196fbce67d8a3e419dd60 files touched by this commit		 Piotr Kubaj (pkubaj) search for other commits by this committer 
biology/metaeuk: append missing bracket
01 Dec 2022 22:58:01
commit hash: 1a0bbb896a78bf4abe39f3e5770a36639eff0eb7commit hash: 1a0bbb896a78bf4abe39f3e5770a36639eff0eb7commit hash: 1a0bbb896a78bf4abe39f3e5770a36639eff0eb7commit hash: 1a0bbb896a78bf4abe39f3e5770a36639eff0eb7 files touched by this commit Sanity Test Failure Refresh 		Piotr Kubaj (pkubaj) search for other commits by this committer 
biology/metaeuk: fix build without libomp and disable -m{arch,cpu}=native
6
26 Nov 2022 11:04:46
commit hash: affc6502d525205e07e5770118a8dc8577bb7d1dcommit hash: affc6502d525205e07e5770118a8dc8577bb7d1dcommit hash: affc6502d525205e07e5770118a8dc8577bb7d1dcommit hash: affc6502d525205e07e5770118a8dc8577bb7d1d files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/metaeuk: New port: Gene discovery and annotation for large-scale
eukaryotic metagenomics

Number of commits found: 14
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