| Port details |
- scrm Coalescent simulator for biological sequences
- 1.7.4_1 biology
 =2      1.7.4_1Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2020-05-15 04:58:32
- Last Update: 2024-03-02 19:59:23
- Commit Hash: 7552b02
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: GPLv3
- WWW:
- https://scrm.github.io/
- Description:
- scrm simulates the evolution of genetic sequences. It takes a neutral
evolutionary model as input, and generates random sequences that evolved under
the model. As coalescent simulator, it traces the ancestry of the sampled
sequences backwards in time and is therefore extremely efficient. Compared to
other coalescent simulators, it can simulate chromosome-scale sequences without
a measureable reduction of genetic linkage between different sites.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/scrm/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/scrm
- pkg install scrm
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: scrm
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1589518122
SHA256 (scrm-scrm-v1.7.4_GH0.tar.gz) = 13f4b0febabcdf6a2b478693febd2fb9d3f47532fb39ffaa4f01fe816f69ceb7
SIZE (scrm-scrm-v1.7.4_GH0.tar.gz) = 341612
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.3 : devel/gmake
- autoconf>=2.71 : devel/autoconf
- automake>=1.16.5 : devel/automake
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_scrm
- USES:
- autoreconf compiler:c++11-lang gmake
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 7
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.7.4_1
02 Mar 2024 19:59:23
 |
Nuno Teixeira (eduardo) |
biology/scrm: Move man pages to share/man
Approved by: portmgr (blanket) |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.7.4
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.7.4
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
1.7.4
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.7.4
15 May 2020 07:30:35
 |
linimon |
Add compiler:c++11-lang to USES to fix build on GCC-based systems:
configure: error: *** A compiler with support for C++11 language features is
required.
Approved by: portmgr (tier-2 blanket) |
1.7.4
15 May 2020 04:58:27
|
yuri |
New port: biology/scrm: Coalescent simulator for biological sequences |
Number of commits found: 7
|
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