*/*: bump PORTREVISION after OpenBLAS upgrade

Remark: this souldn’t be necessary, because the version of the library is the
same, but due to many changes between these releases, it is safer this way.

PR:		284314

*/*: bump PORTREVISION after the upgrade to OpenBLAS

math/jags: Moved man to share/man

Approved by:    portmgr (blanket)

*/*: bump PORTREVISION after the upgrade of OpenBLAS

PR:		273219

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov

math/jags: update to 4.3.1

Reported by:	portscout

Remove # $FreeBSD$ from Makefiles.

Bump 37 ports depending on math/openblas through USES=blaslapack:openblas
because after the recent math/openblas update the library name changed in
openblas

Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix

onvert to UCL & cleanup pkg-message (categories l-m)

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

math/jags: Update to 4.3.0

Additional port changes:
* Changed to DISTVERSION
* Added LICENSE_FILE
* Added dependency devel/libltdl

Reported by:	portscout
Approved by:	tcberner (mentor, implicit)

Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275

Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

1: Update to 4.2.0.
2: strip binary.
3: modenize.

Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry

Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

Use USES=pathfix where applicable.

PR:		213195
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D8093

Allow selection of optimised BLAS implementations via OPTIONs

PR:		213090
Submitted by:	elferdo@gmail.com

Reset ports maintained by bf@ until he has time again to work on them.

PR:		210474
Submitted by:	jbeich
With hat:	portmgr-secretary

- Fix trailing whitespace in pkg-messages

Approved by:	portmgr blanket

Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight

math/jags: 3.4.0 -> 4.0.0

- New WWW
- Changes:
 
https://martynplummer.wordpress.com/2015/08/02/whats-new-in-jags-4-0-0-part-14-reproducibility-and-testing/
 
https://martynplummer.wordpress.com/2015/08/09/whats-new-in-jags-4-0-0-part-24-dealing-with-undefined-nodes/
 
https://martynplummer.wordpress.com/2015/08/16/whats-new-in-jags-4-0-0-part-34-r-style-features/#more-353

PR:		204525
Submitted by:	Rainer Hurling <rhurlin@gwdg.de>
Approved by:	bf

MASTER_SITES cleanup.

- Replace ${MASTER_SITE_FOO} with FOO.
- Merge MASTER_SITE_SUBDIR into MASTER_SITES when possible. (This means 99.9%
  of the time.)
- Remove occurrences of MASTER_SITE_LOCAL when no subdirectory was present and
  no hint of what it should be was present.
- Fix some logic.
- And generally, make things more simple and easy to understand.

While there, add magic values to the FESTIVAL, GENTOO, GIMP, GNUPG, QT and
SAMBA macros.

Also, replace some EXTRACT_SUFX occurences with USES=tar:*.

Checked by:	make fetch-urlall-list
With hat:	portmgr
Sponsored by:	Absolight

Cleanup plist

Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

Repair instances, almost all courtesy of bf ;-), of spaces
and/or tabs before the =. This made doing regular expressions
on the ports tree really difficult.

Approved by:	portmgr (not really, but touches unstaged ports)

1: Stagify.
2: USES=libtool, bump version.

Approved by:	portmgr@

Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

Remove trailing whitespaces from category math

Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases
USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)

According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)

Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui

Update to 3.4.0

PR:		181873

Add NO_STAGE all over the place in preparation for the staging support (cat:
math)

Convert USE_BISON to USES= bison

It brings bison as a build dependency in case it is set the following way:
USES= bison or USES= bison:build

it brings bison as a run dependency in case it is set the following way:
USES= bison:run

it brings bison both as a run and build dependency in case it the set the
following way:
USES= bison:both

While here trim some headers
Convert some USE_GNOME= gnomehack to USES= pathfix

update to 3.3.0

Feature safe:	yes

clean up pkg-descr and correct WWW; while here, switch to
the new options format

update to 3.2.0, simplify, and fix NOPORTEXAMPLES

adjust linking and comments in dependent ports after the math/atlas update;
math/atlas-devel will be updated to use the same constructs at a later date

PR:             162706
Approved by:    miwi (portmgr)
Feature safe:   yes

- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:             157936
Submitted by:   myself
Exp-runs by:    pav
Approved by:    pav

update to 3.1.0

update to 3.0.0

Remove addition of CPPFLAGS to CONFIGURE_ENV
in port Makefiles, and MD5 entries in distinfo

-Chase some silent upstream distfile changes
-Clean-up port Makefile

Approved by:    makc, miwi (mentors, implicit)
Feature safe:   yes

Update to 2.2.0

PR:             154053
Submitted by:   wen
Approved by:    makc, miwi (mentors, implicit)
Feature safe:   yes

Change my ports to use my FreeBSD.org email address.

- Update to 2.1.0

PR:             146611
Submitted by:   bf <bf1783@gmail.com> (maintainer)

Update to 2.0.0-20100430
Rename port to mcmc-jags to avoid conflict with net/jags

PR:             ports/146180
Submitted by:   b.f. <bf1783 at gmail.com> (maintainer)

- Bump PORTREVISION to chase the update of libRmath

- Update to 1.0.4

PR:             142051
Submitted by:   bf <bf1783@gmail.com> (maintainer)

Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr

Fix plist

PR:             137882
Submitted by:   bf <bf1783@gmail.com> (maintainer)

Distfiles were rerolled with new examples and documentation

PR:             137777
Submitted by:   bf <bf1783@gmail.com> (maintainer)

- Update maintainer mail adresse

Submitted by:   "b. f." <bf1783@gmail.com> (maintainer via private mail)

- fix location of pkgconfig data
- fix linker flags
- USE_LDCONFIG
- respect NOPORTEXAMPLES
- bump PORTREVISION

PR:             ports/130812
Submitted by:   bf <bf2006a@yahoo.com> (maintainer)

bf2006a@yahoo.com requested maintainership, reassign accordingly.

PR:             130723

Update from version 0.90 to 1.0.3, which appears to fix a compilation
problem.  Also removed F77 from CONFIGURE_ENV.  Resign maintainership,
moving to ports@FreeBSD.org.

Submitted by:   Eric van Gyzen <eric+fbports@vangyzen.net> (maintainer)

Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.

Remove always-false/true conditions based on OSVERSION 500000

Now we use USE_FORTRAN=yes to use FORTRAN compiler.

Approved by:    maintainer

Migrate to gfortran42.
Bump portrevision.

Approved by:    portmgr(kris)

SHA256ify

- Chase math/libRmath update (bump PORTREVISION)
- Pacify portlint

- Remove commas from BROKEN message

- Update to 0.90
- Change maintainer e-mail
- Mark BROKEN on 4.x

PR:             ports/87275
Submitted by:   maintainer

Fix build with gcc 3.4

PR:             71206
Submitted by:   Eric van Gyzen <vangyzen@stat.duke.edu>

Add jags, Just Another Gibbs Sampler. A program for Bayesian analysis of
graphical models via Gibbs sampling, not wholy unlike classic BUGS.

PR:             ports/66648
Submitted by:   Eric van Gyzen <vangyzen@stat.duke.edu>