| Port details |
- vbz-compression Variable byte integer encoding to compress Oxford Nanopore signal data
- 1.0.3 archivers
 =2      1.0.3Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2021-08-13 01:51:07
- Last Update: 2023-05-25 11:34:34
- Commit Hash: e5b670d
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: MPL20
- WWW:
- https://github.com/nanoporetech/vbz_compression
- Description:
- VBZ Compression uses variable byte integer encoding to compress Oxford
Nanopore signal data.
The performance of VBZ is achieved by taking advantage of the properties of the
raw signal and therefore is most effective when applied to the signal dataset.
Other datasets you may have in your Fast5 files will not be able to take
advantage of the default VBZ settings for compression. VBZ will be used as the
default compression scheme in a future release of MinKNOW.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- vbz-compression>0:archivers/vbz-compression
- To install the port:
- cd /usr/ports/archivers/vbz-compression/ && make install clean
- To add the package, run one of these commands:
- pkg install archivers/vbz-compression
- pkg install vbz-compression
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: vbz-compression
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1661638684
SHA256 (nanoporetech-vbz_compression-v1.0.3_GH0.tar.gz) = a7450e076db628681bbc0e2b3f941c6c21cc2981a7e1c78628807ffdf1b34f31
SIZE (nanoporetech-vbz_compression-v1.0.3_GH0.tar.gz) = 5339759
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- streamvbyte>=0.4.1 : archivers/streamvbyte
- cmake : devel/cmake-core
- ninja : devel/ninja
- Library dependencies:
-
- libhdf5.so : science/hdf5
- libzstd.so : archivers/zstd
- This port is required by:
- for Libraries
-
- biology/py-ont-fast5-api
Configuration Options:- No options to configure
- Options name:
- archivers_vbz-compression
- USES:
- cmake
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 7
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.0.3
25 May 2023 11:34:34
 |
Jason W. Bacon (jwb) |
archivers/vbz-compression: Update to 1.0.3
No upstream changes, only updated streamvbyte submodule
Port: Update the filename of the new unbundled streamvbyte library
Reported by: portscout |
1.0.2_2
23 Apr 2023 09:09:58
|
Gerald Pfeifer (gerald) |
*: Bump PORTREVISIONs for math/mpc update to 1.3.1 |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.0.2_1
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.0.2_1
20 Jul 2022 14:35:24
|
Tobias C. Berner (tcberner) |
science/hdf5: bump PORTREVISION of consumers
The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .
Reported by: VVD <vvd@unislabs.com> |
1.0.2
29 Apr 2022 12:41:01
|
Jason W. Bacon (jwb) |
archivers/vbz-compression: Update to 1.0.2
Upstream support for Apple silicon and static libs
Reported by: portscout |
1.0.1
13 Aug 2021 01:50:35
|
Jason W. Bacon (jwb) |
archivers/vbz-compression: Compression for Oxford Nanopore signal data
VBZ Compression uses variable byte integer encoding to compress Oxford
Nanopore signal data. |
Number of commits found: 7
|
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