VBZ Compression uses variable byte integer encoding to compress Oxford
Nanopore signal data.
The performance of VBZ is achieved by taking advantage of the properties of the
raw signal and therefore is most effective when applied to the signal dataset.
Other datasets you may have in your Fast5 files will not be able to take
advantage of the default VBZ settings for compression. VBZ will be used as the
default compression scheme in a future release of MinKNOW.
Release numerous ports to ports@
I've been retired for a few years, and it is unlikely I will be doing
any more scientific computing support in the future. I have continued
to maintain ~160 ports to the best of my ability, mainly as a favor to
the community, but I can no longer justify the time and effort
required. I am therefore releasing most of my scientific ports, along
with a few others, to ports@. I will continue to maintain ports I am
actively using and those for which I am upstream.
archivers/vbz-compression: Update to 1.0.12
Change logs are not published by nanoporetech. Github commits only
reflect releases of internally developed code.
Reported by: portscout
archivers/vbz-compression: Update to 1.0.3
No upstream changes, only updated streamvbyte submodule
Port: Update the filename of the new unbundled streamvbyte library
Reported by: portscout
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
science/hdf5: bump PORTREVISION of consumers
The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .
Reported by: VVD <vvd@unislabs.com>
archivers/vbz-compression: Compression for Oxford Nanopore signal data
VBZ Compression uses variable byte integer encoding to compress Oxford
Nanopore signal data.
