| Port details |
- barrnap BAsic Rapid Ribosomal RNA Predictor
- 0.9 biology
 =2      0.9Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2022-11-25 03:09:22
- Last Update: 2022-11-25 03:12:18
- Commit Hash: 20cc8e4
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- Also Listed In: science
- License: GPLv3
- WWW:
- https://github.com/tseemann/barrnap
- Description:
- Barrnap predicts the location of ribosomal RNA genes in genomes. It supports
bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), metazoan mitochondria
(12S,16S) and eukaryotes (5S,5.8S,28S,18S).
It takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new
nhmmer tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style.
Multithreading is supported and one can expect roughly linear speed-ups with
more CPUs.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- barrnap>0:biology/barrnap
- To install the port:
- cd /usr/ports/biology/barrnap/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/barrnap
- pkg install barrnap
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: barrnap
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1669343398
SHA256 (tseemann-barrnap-0.9_GH0.tar.gz) = 36c27cd4350531d98b3b2fb7d294a2d35c15b7365771476456d7873ba33cce15
SIZE (tseemann-barrnap-0.9_GH0.tar.gz) = 11837541
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.3 : devel/gmake
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Runtime dependencies:
-
- bedtools : biology/bedtools
- nhmmer : biology/hmmer
- perl5>=5.32.r0<5.33 : lang/perl5.32
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_barrnap
- USES:
- gmake perl5
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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