| Port details |
- bfc Correct sequencing errors from Illumina sequencing data
- g20150417 biology
 =2      g20150417Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2021-08-23 17:30:17
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: MIT
- WWW:
- https://github.com/lh3/bfc
- Description:
- BFC is a standalone high-performance tool for correcting sequencing
errors from Illumina sequencing data. It is specifically designed for
high-coverage whole-genome human data, though also performs well for
small genomes.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/bfc/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/bfc
- pkg install bfc
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: bfc
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1629673065
SHA256 (lh3-bfc-g20150417-69ab176e_GH0.tar.gz) = 202913e590421d23571c5e7c5cb9c23730ee57cb5b2eaa0e7806d33c49482452
SIZE (lh3-bfc-g20150417-69ab176e_GH0.tar.gz) = 68138
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.3 : devel/gmake
- This port is required by:
- for Run
-
- biology/biostar-tools
Configuration Options:- No options to configure
- Options name:
- biology_bfc
- USES:
- gmake
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 3
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
07 Sep 2022 21:58:51
 |
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
g20150417
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
g20150417
23 Aug 2021 17:28:41
|
Jason W. Bacon (jwb) |
biology/bfc: Correct sequencing errors from Illumina sequencing data
BFC is a standalone high-performance tool for correcting sequencing
errors from Illumina sequencing data. It is specifically designed for
high-coverage whole-genome human data, though also performs well for
small genomes. |
Number of commits found: 3
|
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