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Port details
biosoup Collection of C++ header-only data structures for bioinformatics
0.11.0_1 biology on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.11.0_1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-01-19 09:02:17
Last Update: 2023-08-29 07:32:45
Commit Hash: 5bc123b
People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
Also Listed In: devel
License: MIT
WWW:
https://github.com/rvaser/biosoup
Description:
Biosoup is a C++ collection of header only data structures used for storage and logging in bioinformatics tools.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (11 items)
Collapse this list.
  1. include/biosoup/nucleic_acid.hpp
  2. include/biosoup/overlap.hpp
  3. include/biosoup/progress_bar.hpp
  4. include/biosoup/sequence.hpp
  5. include/biosoup/timer.hpp
  6. lib/cmake/biosoup/biosoupConfig.cmake
  7. lib/cmake/biosoup/biosoupConfigVersion.cmake
  8. lib/cmake/biosoup/biosoupTargets.cmake
  9. /usr/local/share/licenses/biosoup-0.11.0_1/catalog.mk
  10. /usr/local/share/licenses/biosoup-0.11.0_1/LICENSE
  11. /usr/local/share/licenses/biosoup-0.11.0_1/MIT
Collapse this list.
Dependency lines:
  • biosoup>0:biology/biosoup
To install the port:
cd /usr/ports/biology/biosoup/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/biosoup
  • pkg install biosoup
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: biosoup
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1684475677 SHA256 (rvaser-biosoup-0.11.0_GH0.tar.gz) = e4addc3965ca9291535a131c07ef958a98e779ef1375d38d354536df66e16cd4 SIZE (rvaser-biosoup-0.11.0_GH0.tar.gz) = 8555
Packages (timestamps in pop-ups are UTC):
biosoup
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.11.0_10.11.0_1g202012160.11.0_10.11.0_1---
FreeBSD:13:quarterly0.11.0_10.11.0_1-0.11.0_10.11.0_10.11.0_10.11.0_10.11.0_1
FreeBSD:14:latest0.11.0_10.11.0_1-0.11.0_10.11.0_1---
FreeBSD:14:quarterly0.11.0_10.11.0_1-0.11.0_10.11.0_10.11.0_10.11.0_10.11.0_1
FreeBSD:15:latest0.11.0_10.11.0_1n/a0.11.0_1n/a0.11.0_10.11.0_10.11.0_1
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake-core
  2. ninja : devel/ninja
Test dependencies:
  1. googletest>0 : devel/googletest
This port is required by:
for Build
  1. biology/bioparser
  2. biology/rampler
  3. biology/spoa
for Run
  1. biology/bioparser
Configuration Options:
No options to configure
Options name:
biology_biosoup
USES:
cmake compiler:c++14-lang
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/rvaser/biosoup/tar.gz/0.11.0?dummy=/
Collapse this list.

Number of commits found: 9

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.11.0_1
29 Aug 2023 07:32:45
commit hash: 5bc123b587b19537873004b8c1b259158aad2e66commit hash: 5bc123b587b19537873004b8c1b259158aad2e66commit hash: 5bc123b587b19537873004b8c1b259158aad2e66commit hash: 5bc123b587b19537873004b8c1b259158aad2e66 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/biosoup: Install cmake files
0.11.0
19 May 2023 07:54:16
commit hash: 27f25fe928ea30c584322fd593daa246734d4754commit hash: 27f25fe928ea30c584322fd593daa246734d4754commit hash: 27f25fe928ea30c584322fd593daa246734d4754commit hash: 27f25fe928ea30c584322fd593daa246734d4754 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/biosoup: Update 0.10.0-2 → 0.11.0

Reported by:	portscout
0.10.0.2_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit		 Gerald Pfeifer (gerald) search for other commits by this committer 
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
0.10.0.2
11 Oct 2022 06:10:56
commit hash: 8ee88cf31bd552cf9159133de2fc4385fd35cd5bcommit hash: 8ee88cf31bd552cf9159133de2fc4385fd35cd5bcommit hash: 8ee88cf31bd552cf9159133de2fc4385fd35cd5bcommit hash: 8ee88cf31bd552cf9159133de2fc4385fd35cd5b files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/biosoup: Update g20201216 -> 0.10.0-2
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit		 Stefan Eßer (se) search for other commits by this committer 
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
g20201216
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit		 Stefan Eßer (se) search for other commits by this committer 
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
g20201216
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit		 Mathieu Arnold (mat) search for other commits by this committer 
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
g20201216
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit		 Mathieu Arnold (mat) search for other commits by this committer 
Remove # $FreeBSD$ from Makefiles.
g20201216
19 Jan 2021 09:01:41
Revision:562035Original commit files touched by this commit		 yuri search for other commits by this committer 
New port: biology/biosoup: Collection of C++ header-only data structures for
bioinformatics

Number of commits found: 9
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