| Port details |
- blat Fast tool for local sequence similarity searches
- 36 biology
 =0      36Version of this port present on the latest quarterly branch.  DEPRECATED: unknown license
 This port expired on: 2018-08-15
- There is no maintainer for this port.
- Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
- Port Added: 2006-03-15 10:29:12
- Last Update: 2018-08-16 20:28:33
- SVN Revision: 477371
- License: NONE
- WWW:
- https://users.soe.ucsc.edu/~kent/
- Description:
- BLAT is a bioinformatics software tool which performs rapid mRNA/DNA and
cross-species protein alignments. BLAT is more accurate and 500 times
faster than popular existing tools for mRNA/DNA alignments and 50 times
faster for protein alignments at sensitivity settings typically used
when comparing vertebrate sequences. (Source: Kent, W.J. 2002. BLAT --
The BLAST-Like Alignment Tool. Genome Research 4: 656-664.
http://dx.doi.org/10.1101/gr.229202)
BLAT is not BLAST. DNA BLAT works by keeping an index of the entire
genome (but not the genome itself) in memory. Since the index takes up a
bit less than a gigabyte of RAM, BLAT can deliver high performance on a
reasonably priced Linux box.
WWW: https://users.soe.ucsc.edu/~kent/
 cgit ¦ GitHub ¦ GitHub ¦ GitLab ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- No installation instructions:
- This port has been deleted.
- PKGNAME: there is no package for this port: _LICENSE_RESTRICTED = delete-package delete-distfiles
- Flavors: there is no flavor information for this port.
- distinfo:
- SHA256 (blatSrc36.zip) = 4b0fff006c86dceb7428922bfb4f8625d78fd362d205df68e4ebba04742d2c71
SIZE (blatSrc36.zip) = 3227463
No package information for this port in our database- Sometimes this happens. Not all ports have packages. Perhaps there is a build error. Check the fallout link:
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake : devel/gmake
- Library dependencies:
-
- libpng.so : graphics/png
- libmysqlclient.so.18 : databases/mysql56-client
- There are no ports dependent upon this port
Configuration Options:- ===> The following configuration options are available for blat-36:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
- Options name:
- N/A
- USES:
- gmake mysql ssl zip
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
36
16 Aug 2018 20:28:33
  |
rene |
Remove expired ports:
2018-08-16 net/traceroute: Upstream gone
2018-08-15 net/e169-stats: unknown license
2018-08-15 net/l4ip: unknown license
2018-08-15 net/dhcprelay: unknown license
2018-08-15 emulators/m2000: unknown license
2018-08-15 textproc/ant-xinclude-task: unknown license
2018-08-15 textproc/bomstrip: unknown license
2018-08-15 x11-fonts/ecofont: unknown license
2018-08-15 mail/roundcube-groupvice: unknown license
2018-08-15 security/pft: unknown license
2018-08-15 devel/kickassembler: unknown license
2018-08-15 devel/gdbmods: unknown license
2018-08-15 devel/as31: unknown license
2018-08-15 databases/dbf2mysql: unknown license (Only the first 15 lines of the commit message are shown above  ) |
36
13 Jul 2018 09:56:57
|
antoine |
Deprecate unmaintained ports under the NONE license |
36
10 Jun 2017 09:01:19
|
amdmi3 |
- Update WWW
- Add LICENSE
- Simplify installation |
36
18 Dec 2016 04:46:54
|
marino |
biology/blat: Fix build on DF (taken from dports) |
36
30 Sep 2016 19:40:13
|
marino |
biology/blat: Fix build with non-base SSL |
36
19 May 2016 11:09:14
|
amdmi3 |
- Fix trailing whitespace in pkg-messages
Approved by: portmgr blanket |
36
16 May 2016 18:20:42
|
amdmi3 |
- Convert to USES=mysql
- Cosmetic fixes |
36
01 Apr 2016 13:29:17
|
mat |
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight |
36
01 Jan 2015 18:17:54
|
riggs |
Update to upstream version 36
PR: 196339
Submitted by: koue@chaosophia.net |
35_1
25 Dec 2014 20:54:43
|
bapt |
Bump portrevision after png update |
35
25 Dec 2014 19:04:27
|
antoine |
Change libpng15.so to libpng.so in LIB_DEPENDS to prepare the upgrade |
35
20 Dec 2014 17:27:09
|
bapt |
Cleanup plist |
35
25 Jun 2014 08:55:56
|
antoine |
Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk |
35
07 Mar 2014 15:52:40
|
bapt |
Convert b* to USES=zip |
35
27 Feb 2014 11:46:11
|
miwi |
- Update to 35
PR: 184245 |
34
12 Nov 2013 22:02:02
|
bapt |
Add stage support
Use bsdtar to extract the distfile
Rip out USE_GMAKE |
34
20 Sep 2013 15:55:44
|
bapt |
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology) |
34
19 Jun 2013 18:44:33
|
bsam |
. remove pkg-plist (along with the previous commit). |
34
19 Jun 2013 18:43:13
|
bsam |
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. use PORTDOCS and PORTDATA at makefile;
. mute mkdirs;
. add padding to PKGMESSAGE;
. remove article from COMMENT. |
34
01 Oct 2012 14:45:17
|
tabthorpe |
- Reassign to the heap at maintainer's request |
34
19 Mar 2011 12:38:54
|
miwi |
- Get Rid MD5 support |
34
25 Jul 2008 14:34:52
|
pav |
- Remove USE_GCC where it can be satisfied with base compiler on following
FreeBSD versions: 5.3 and up, 6.x, 7.x, 8-CURRENT |
34
30 Apr 2008 23:19:29
|
okazaki |
Update to version 34.
Remove BROKEN.
PR: 123218
Submitted by: maintainer |
33
04 Jan 2008 15:14:52
|
arved |
Fix build on !i386
PR: 118922
Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
Approved by: Fernan Aguero <fernan@iib.unsam.edu.ar> |
33
04 Dec 2007 23:08:55
|
pav |
- Mark BROKEN outside i386: does not compile
Reported by: pointyhat
Approved by: portmgr (hat) |
33
02 Oct 2007 09:10:48
|
linimon |
Mark as broken on gcc4.2. |
33
02 May 2007 07:15:18
|
edwin |
[patch] cleanup non-supported FreeBSD versions
PR: ports/111726
Submitted by: Edwin Groothuis <edwin@mavetju.org>
Approved by: maintainer timeout |
33
15 Mar 2006 10:26:12
|
garga |
Add blat 33, a fast tool for local sequence similarity searches.
PR: ports/93060
Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> |
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