| Port details |
- clustal-omega Multiple alignment of nucleic acid and protein, replaces clustalw
- 1.2.4 biology
 =2      1.2.4Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2018-05-21 22:15:40
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: GPLv2
- WWW:
- http://www.clustal.org/omega/
- Description:
- Clustal Omega is the latest addition to the Clustal family. It offers a
significant increase in scalability over previous versions, allowing hundreds
of thousands of sequences to be aligned in only a few hours. It will also make
use of multiple processors, where present. In addition, the quality of
alignments is superior to previous versions, as measured by a range of popular
benchmarks.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- clustal-omega>0:biology/clustal-omega
- To install the port:
- cd /usr/ports/biology/clustal-omega/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/clustal-omega
- pkg install clustal-omega
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: clustal-omega
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1526846209
SHA256 (clustal-omega-1.2.4.tar.gz) = 8683d2286d663a46412c12a0c789e755e7fd77088fb3bc0342bb71667f05a3ee
SIZE (clustal-omega-1.2.4.tar.gz) = 1170516
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Library dependencies:
-
- libargtable2.so : devel/argtable
- This port is required by:
- for Run
-
- biology/biostar-tools
Configuration Options:- No options to configure
- Options name:
- biology_clustal-omega
- USES:
- libtool localbase
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
07 Sep 2022 21:58:51
 |
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.2.4
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.2.4
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
1.2.4
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.2.4
21 May 2018 22:15:26
 |
jwb |
biology/clustal-omega: Multiple alignment of nucleic acid and protein, replaces
clustalw
Approved by: jrm
Differential Revision: https://reviews.freebsd.org/D15516 |
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