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Port details
clustalx Multiple alignment of nucleic acid and protein sequences with GUI
2.1 biology Deleted Σ=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.1Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: Qt4 has been EOL since december 2015
Expired This port expired on: 2019-03-15
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-05-21 20:56:34
Last Update: 2019-03-16 21:55:51
SVN Revision: 495967
License: LGPL3
WWW:
http://www.clustal.org/
Description: #
ClustalX is the graphical version of Clustal, a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence alignments of divergent sequences. It calculates the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen. Evolutionary relationships can be seen via viewing Cladograms or Phylograms. WWW: http://www.clustal.org/
Homepage    cgit ¦ GitHub ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages: #
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist #
Expand this list (8 items)
Collapse this list.
  1. bin/clustalx
  2. /usr/local/share/clustalx/colprot.xml
  3. /usr/local/share/clustalx/coldna.xml
  4. /usr/local/share/clustalx/colprint.xml
  5. /usr/local/share/clustalx/clustalx.hlp
  6. /usr/local/share/licenses/clustalx-2.1/catalog.mk
  7. /usr/local/share/licenses/clustalx-2.1/LICENSE
  8. /usr/local/share/licenses/clustalx-2.1/LGPL3
Collapse this list.
USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • clustalx>0:biology/clustalx
No installation instructions:
This port has been deleted.
PKGNAME: clustalx
Flavors: there is no flavor information for this port. #
distinfo: #
TIMESTAMP = 1526839706 SHA256 (clustalx-2.1.tar.gz) = e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05 SIZE (clustalx-2.1.tar.gz) = 341649
No package information for this port in our database #
Sometimes this happens. Not all ports have packages. Perhaps there is a build error. Check the fallout link: pkg-fallout
Dependencies #
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies: #
  1. moc : devel/qt4-moc
  2. qmake : devel/qt4-qmake
Runtime dependencies: #
  1. moc : devel/qt4-moc
Library dependencies: #
  1. libQtCore.so : devel/qt4-corelib
  2. libQtGui.so : x11-toolkits/qt4-gui
  3. libQtXml.so : textproc/qt4-xml
There are no ports dependent upon this port #
Configuration Options: #
No options to configure
Options name: #
N/A
USES: #
qmake qt:4
FreshPorts was unable to extract/find any pkg message #
Master Sites: #
Expand this list (2 items)
Collapse this list.
  1. ftp://ftp.ebi.ac.uk/pub/software/clustalw2/2.1/
  2. http://www.clustal.org/download/current/
Collapse this list.

Number of commits found: 4 #

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
2.1
16 Mar 2019 21:55:51
Revision:495967Original commit files touched by this commit		 tcberner search for other commits by this committer 
Qt4 deprecation: Remove Qt4 and its consumes.

2019-03-15 accessibility/qt4-accessible: Qt4 has been EOL since december 2015
2019-03-15 astro/qlandkartegt: Qt4 has been EOL since december 2015
2019-03-15 astro/stellarium-qt4: Qt4 has been EOL since december 2015
2019-03-15 astro/xglobe: Qt4 has been EOL since december 2015
2019-03-15 audio/acoustid-fingerprinter: Qt4 has been EOL since december 2015
2019-03-15 audio/cueplayer: Qt4 has been EOL since december 2015
2019-03-15 audio/esperanza: Qt4 has been EOL since december 2015
2019-03-15 audio/lastfm-desktop: Qt4 has been EOL since december 2015
2019-03-15 audio/minitunes: Qt4 has been EOL since december 2015
2019-03-15 audio/mixxx20: Qt4 has been EOL since december 2015
2019-03-15 audio/mumble: Qt4 has been EOL since december 2015
2019-03-15 audio/murmur: Qt4 has been EOL since december 2015
2019-03-15 audio/puddletag: Qt4 has been EOL since december 2015
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.1
02 Dec 2018 15:41:48
Revision:486467Original commit files touched by this commit		 rene search for other commits by this committer 
Mark QT4 ports/functionality for removal on 2019-03-15

While here, chase some KDE4 ports and functionality, these are scheduled for
removal on 2018-12-31. Change the default option/flavor to QT5 where applicable
or use alternative toolkits like GTK.

Submitted by:	tcberner
Reviewed by:	adridg, jhale, rene, tcberner
Approved by:	portmgr (implicit, flavor hook)
Differential Revision:	https://reviews.freebsd.org/D17741
2.1
28 Jun 2018 17:39:55
Revision:473503Original commit files touched by this commit		 tcberner search for other commits by this committer 
Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk

From now on, ports that depend on Qt4 will have to set
	USES=		qt:4
	USE_QT=		foo bar
ports depending on Qt5 will use
	USES=		qt:5
	USE_QT=		foo bar

PR:		229225
Exp-run by:	antoine
Reviewed by:	mat
Approved by:	portmgr (antoine)
Differential Revision:	-https://reviews.freebsd.org/D15540
2.1
21 May 2018 20:56:18
Revision:470575Original commit files touched by this commit		 jwb search for other commits by this committer 
biology/clustalx: Multiple alignment of nucleic acid and protein sequences with
GUI

Approved by:    jrm
Differential Revision:  https://reviews.freebsd.org/D15505

Number of commits found: 4

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