| Port details |
- cytoscape Software to visualize molecular interaction networks, gene expression
- 3.6.1 biology
 =4      3.6.1Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2018-07-03 08:43:08
- Last Update: 2024-12-31 08:57:55
- Commit Hash: 0835676
- People watching this port, also watch:: firefox, chromium, telegram-desktop, memcached, osv-scanner
- Also Listed In: java
- License: LGPL21
- WWW:
- https://www.cytoscape.org
- Description:
- Cytoscape is an open source software platform for visualizing complex networks
and integrating these with any type of attribute data. A lot of Apps are
available for various kinds of problem domains, including bioinformatics, social
network analysis, and semantic web.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- cytoscape>0:biology/cytoscape
- To install the port:
- cd /usr/ports/biology/cytoscape/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/cytoscape
- pkg install cytoscape
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: cytoscape
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1530956058
SHA256 (FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz) = f3e33e99168b56768d2ee854956e59bcbb888101fd518239887524d692b78f7a
SIZE (FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz) = 1235655281
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- maven363>0 : devel/maven363
- bash : shells/bash
- java : java/openjdk8
- Runtime dependencies:
-
- bash : shells/bash
- java : java/openjdk8
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_cytoscape
- USES:
- java shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
3.6.1
31 Dec 2024 08:57:55
 |
Muhammad Moinur Rahman (bofh) |
Mk/**java.mk: Convert bsd.java.mk to USES
The following features have been added or changed:
- Instead of USE_JAVA use USES=java. This defaults to
USES=java:build,run if NO_BUILD is undefined. Else it defaults to
USES=java:run
- Instead of USE_ANT=yes use USES=java:ant which also implies
USES=java:build
- Instead of JAVA_BUILD=yes use USES=java:build. Does not imply run or
extract
- Instead of JAVA_EXTRACT=yes use USES=java:extract does not imply
build or run
- Instead of JAVA_RUN=yes use USES=java:run does not imply extract or
build
- Instead of USE_JAVA=<version> use USES=java and JAVA_VERSION=<version>
Approved by: mat (portmgr), glewis
Differential Revision: https://reviews.freebsd.org/D48201 |
3.6.1
26 May 2024 01:45:24
|
Yuri Victorovich (yuri) |
biology/cytoscape: Broken on i386 |
3.6.1
11 Dec 2022 07:41:04
|
Yuri Victorovich (yuri) |
biology/cytoscape: Broken on armv6, armv7
Reported by: fallout |
3.6.1
26 Nov 2022 19:37:22
|
Yuri Victorovich (yuri) |
biology/cytoscape: Fix build
maven-3.6.3 should be used. |
3.6.1
24 Nov 2022 21:03:41
|
Yuri Victorovich (yuri) |
biology/cytoscape: Unbreak by re-adding and using maven-3.6.3
Cytoscape was broken by the maven update. |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
3.6.1
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
3.6.1
12 May 2021 11:55:52
|
Dmitry Marakasov (amdmi3) |
biology/cytoscape: mark unconditionally BROKEN
Approved by: portmgr blanket |
3.6.1
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
3.6.1
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
3.6.1
26 Nov 2019 21:46:13
 |
jkim |
Clean up after java/openjdk6 and java/openjdk6-jre removal
java/openjdk6 support was removed from Mk/bsd.java.mk (r512662) and
java/openjdk6 and java/openjdk6-jre were removed from the ports tree
(r512663). Now this patch completely removes remaining stuff from the
ports tree.
PR: 241953 (exp-run)
Reviewed by: glewis
Approved by: portmgr (antoine)
Differential Revision: https://reviews.freebsd.org/D22342 |
3.6.1
12 Aug 2018 06:29:52
|
yuri |
biology/cytoscape: Fix license
Reported by: linimon |
3.6.1
12 Aug 2018 04:06:01
|
linimon |
Mark as broken on arm.
Approved by: portmgr (tier-2 blanket) |
3.6.1
03 Jul 2018 08:42:54
|
yuri |
New port: biology/cytoscape: Software to visualize molecular interaction
networks, gene expression |
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