| Port details |
- emboss Collection of open source tools for genetic sequence analysis
- 6.6.0_7 biology
 =4      6.6.0_7Version of this port present on the latest quarterly branch. - Maintainer: wen@FreeBSD.org
- Port Added: 2000-07-31 16:13:54
- Last Update: 2023-12-29 18:24:39
- Commit Hash: ee6c86a
- People watching this port, also watch:: graphviz, py39-biopython, courier-authlib-pgsql, courier-imap, py39-sqlobject
- License: GPLv2
- WWW:
- http://www.emboss.org/
- Description:
- The European Molecular Biology Open Software Suite (EMBOSS) is a
comprehensive set (about 100) of open source tools for genetic sequence
analysis. EMBOSS is produced by the European Molecular Biology Network
(EMBnet - http://www.embnet.org/).
All EMBOSS tools are all built around the same set of core libraries - AJAX
and NUCLEUS - and therefore share a unified user interface, have similar
"look and feel", and implement a uniform sequence addressing methodology.
The various components of EMBOSS are distributed under the GPL, except the
core libraries which are under the LGPL.
EMBASSY packages are third party applications which have been integrated with
the EMBOSS suite, but which are not included in the base EMBOSS distribution
for licensing or other reasons. The EMBASSY packages live in the
biology/embassy port.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- Conflicts:
- CONFLICTS:
- To install the port:
- cd /usr/ports/biology/emboss/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/emboss
- pkg install emboss
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: emboss
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1632518858
SHA256 (emboss/EMBOSS-6.6.0.tar.gz) = 7184a763d39ad96bb598bfd531628a34aa53e474db9e7cac4416c2a40ab10c6e
SIZE (emboss/EMBOSS-6.6.0.tar.gz) = 117962028
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- clustalw : biology/clustalw
- primer3 : biology/primer3
- gmake>=4.3 : devel/gmake
- x11.pc : x11/libX11
- xpm.pc : x11/libXpm
- Runtime dependencies:
-
- x11.pc : x11/libX11
- xpm.pc : x11/libXpm
- Library dependencies:
-
- libgd.so : graphics/gd
- libpng.so : graphics/png
- libgd.so : graphics/gd
- libpng.so : graphics/png
- libpq.so.5 : databases/postgresql15-client
- libXm.so.4 : x11-toolkits/open-motif
- This port is required by:
- for Libraries
-
Deleted ports which required this port:
- for Run
-
- biology/biostar-tools
Configuration Options:- ===> The following configuration options are available for emboss-6.6.0_7:
DOCS=on: Build and/or install documentation
MYSQL=off: MySQL database support
X11=on: X11 (graphics) support
===> Use 'make config' to modify these settings
- Options name:
- biology_emboss
- USES:
- gmake libtool iconv localbase:ldflags pgsql ssl motif xorg
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 105 (showing only 5 on this page)
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
08 Sep 2000 11:07:13
 |
nbm |
Upgrade to 1.5.0 |
07 Sep 2000 15:02:53
|
nbm |
Update to emboss 1.4.0. |
21 Aug 2000 11:07:37
|
sobomax |
USE_LIBTOOL implies GNU_CONFIGURE, so remove redundant GNU_CONFIGURE lines. |
12 Aug 2000 17:15:48
|
nbm |
Update to emboss 1.1.0, fixing some style bugs too. |
31 Jul 2000 20:13:54
|
nbm |
Add emboss, the European Molecular Biology Open Software Suite |
Number of commits found: 105 (showing only 5 on this page)
|
As an Amazon Associate I earn from qualifying purchases.