| Port details |
- fastahack Utility for indexing and sequence extraction from FASTA files
- 1.0.0 biology
 =3      1.0.0Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2018-04-16 14:50:59
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: GPLv2
- WWW:
- https://github.com/ekg/fastahack
- Description:
- Fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- fastahack>0:biology/fastahack
- To install the port:
- cd /usr/ports/biology/fastahack/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/fastahack
- pkg install fastahack
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: fastahack
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1570397147
SHA256 (ekg-fastahack-v1.0.0_GH0.tar.gz) = cc1c04729b0c8ba3647cbb7e15e2b490ce701d73773f30f5892d68c36a1dceae
SIZE (ekg-fastahack-v1.0.0_GH0.tar.gz) = 18766
Packages (timestamps in pop-ups are UTC):
- This port has no dependencies.
- This port is required by:
- for Build
-
- biology/freebayes
Configuration Options:- No options to configure
- Options name:
- biology_fastahack
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 6
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
07 Sep 2022 21:58:51
 |
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.0.0
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.0.0
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
1.0.0
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.0.0
06 Oct 2019 21:34:32
 |
jwb |
biology/fastahack: Upgrade to 1.0.0
Very few changes, upstream just finally got around to cutting a release.
Reported by: portscout |
g20160702
16 Apr 2018 14:50:46
|
jwb |
biology/fastahack: Utility for indexing and sequence extraction from FASTA files
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D15080 |
Number of commits found: 6
|
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