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Port details
fastani Fast Whole-Genome Similarity (ANI) Estimation
1.34 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.34Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2024-09-21 03:06:09
Last Update: 2024-11-03 06:47:52
Commit Hash: 72e82b9
License: APACHE20
WWW:
https://github.com/ParBLiSS/FastANI
Description:
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
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  1. bin/fastANI
  2. /usr/local/share/licenses/fastani-1.34/catalog.mk
  3. /usr/local/share/licenses/fastani-1.34/LICENSE
  4. /usr/local/share/licenses/fastani-1.34/APACHE20
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Dependency lines:
  • fastani>0:biology/fastani
To install the port:
cd /usr/ports/biology/fastani/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/fastani
  • pkg install fastani
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: fastani
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1726871246 SHA256 (ParBLiSS-FastANI-v1.34_GH0.tar.gz) = dc185cf29b9fa40cdcc2c83bb48150db46835e49b9b64a3dbff8bc4d0f631cb1 SIZE (ParBLiSS-FastANI-v1.34_GH0.tar.gz) = 3899028

Expand this list (2 items)

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SHA256 (catchorg-Catch2-359542d_GH0.tar.gz) = 607bf5322291859a136b2580151f41897335e91c51fe0c4dd3950093ff96244b SIZE (catchorg-Catch2-359542d_GH0.tar.gz) = 1031988

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Packages (timestamps in pop-ups are UTC):
fastani
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.341.34--1.34---
FreeBSD:13:quarterly1.341.34--1.34---
FreeBSD:14:latest1.341.34--1.34---
FreeBSD:14:quarterly1.341.34--1.34---
FreeBSD:15:latest1.341.34n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake-core
  2. ninja : devel/ninja
Library dependencies:
  1. libgsl.so : math/gsl
There are no ports dependent upon this port
Configuration Options:
No options to configure
Options name:
biology_fastani
USES:
cmake:testing
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
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  1. https://codeload.github.com/ParBLiSS/FastANI/tar.gz/v1.34?dummy=/
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Number of commits found: 2

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.34
03 Nov 2024 06:47:52
commit hash: 72e82b9c563912ee65f656d9aaba164fc9f3d0f8commit hash: 72e82b9c563912ee65f656d9aaba164fc9f3d0f8commit hash: 72e82b9c563912ee65f656d9aaba164fc9f3d0f8commit hash: 72e82b9c563912ee65f656d9aaba164fc9f3d0f8 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/fastani: Broken where OpenMP isn't available; Update WWW

Reported by:	fallout
1.34
21 Sep 2024 03:03:29
commit hash: 89f62deb8a91f3b5b4aebf2d655e70e4ae130680commit hash: 89f62deb8a91f3b5b4aebf2d655e70e4ae130680commit hash: 89f62deb8a91f3b5b4aebf2d655e70e4ae130680commit hash: 89f62deb8a91f3b5b4aebf2d655e70e4ae130680 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/fastani: New port: Fast Whole-Genome Similarity (ANI) Estimation

Number of commits found: 2
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