| Port details |
- fastqc Quality control tool for high throughput sequence data
- 0.12.1 biology
 =2      0.12.1Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2017-11-30 22:54:38
- Last Update: 2023-03-05 00:17:20
- Commit Hash: a5b1448
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- Also Listed In: java perl5
- License: GPLv3
- WWW:
- https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
- Description:
- FastQC aims to provide a simple way to do some quality control checks on raw
sequence data coming from high throughput sequencing pipelines. It provides a
modular set of analyses which you can use to give a quick impression of whether
your data has any problems of which you should be aware before doing any
further analysis.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/fastqc/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/fastqc
- pkg install fastqc
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: fastqc
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1677972229
SHA256 (fastqc_v0.12.1.zip) = 5f4dba8780231a25a6b8e11ab2c238601920c9704caa5458d9de559575d58aa7
SIZE (fastqc_v0.12.1.zip) = 11709692
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Runtime dependencies:
-
- java : java/openjdk8
- perl5>=5.32.r0<5.33 : lang/perl5.32
- This port is required by:
- for Run
-
- biology/atac-seq
- biology/biostar-tools
- biology/chip-seq
- biology/p5-TrimGalore
- biology/rna-seq
Configuration Options:- No options to configure
- Options name:
- biology_fastqc
- USES:
- zip perl5 shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 8
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
0.12.1
05 Mar 2023 00:17:20
 |
Jason W. Bacon (jwb) |
biology/fastqc: Update to 0.12.1
Several feature enhancements and a few bug fixes
Changes: https://github.com/s-andrews/FastQC/releases
Reported by: portscout |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
0.11.9
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
0.11.9
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
0.11.9
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
0.11.9
04 Feb 2021 15:56:33
 |
jwb |
biology/fastqc: Update to 0.11.9
Minor bug fixes since 0.11.8 |
0.11.8
21 Sep 2019 02:44:54
|
jwb |
biology/fastqc: Upgrade to 0.11.8
Minor bug fixes and edge case handling.
Minor Makefile clean up. |
0.11.5
30 Nov 2017 22:54:29
|
jwb |
[new port] biology/fastqc: Quality control tool for high throughput sequence
data
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D13304 |
Number of commits found: 8
|
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