| Port details |
- fastx-toolkit CLI tools for Short-Reads FASTA/FASTQ files preprocessing
- 0.0.14_1 biology
 =2      0.0.14_1Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2015-09-25 18:33:28
- Last Update: 2023-03-07 17:28:13
- Commit Hash: d892482
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: AGPLv3+
- WWW:
- http://hannonlab.cshl.edu/fastx_toolkit/
- Description:
- The FASTX-Toolkit is a collection of command line tools for Short-Reads
FASTA/FASTQ files preprocessing.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- fastx_toolkit>0:biology/fastx-toolkit
- Conflicts:
- CONFLICTS_INSTALL:
- To install the port:
- cd /usr/ports/biology/fastx-toolkit/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/fastx-toolkit
- pkg install fastx_toolkit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: fastx_toolkit
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1678210010
SHA256 (agordon-fastx_toolkit-0.0.14_GH0.tar.gz) = af4f9fe59f8c91bdd2d735bdac1fd89f0549b2bc759313fe3b86948056aad1aa
SIZE (agordon-fastx_toolkit-0.0.14_GH0.tar.gz) = 259576
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- pkgconf>=1.3.0_1 : devel/pkgconf
- autoconf>=2.71 : devel/autoconf
- automake>=1.16.5 : devel/automake
- libtoolize : devel/libtool
- Runtime dependencies:
-
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Library dependencies:
-
- libgtextutils.so : biology/libgtextutils
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_fastx-toolkit
- USES:
- autoreconf libtool perl5 pkgconfig shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
0.0.14_1
07 Mar 2023 17:28:13
 |
Jason W. Bacon (jwb) |
biology/fastx-toolkit: Unbreak build on 14-CURRENT
Remove developer warning flags, including -Werror causing build failure |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
0.0.14
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
0.0.14
06 Feb 2022 18:36:07
|
Stefan Eßer (se) |
Update CONFLICTS definitions in categories a* to c*
Update the CONFLICTS definitions of ports in the following categories:
- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters
An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.
There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.
Approved by: portmgr (implicit) |
0.0.14
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
0.0.14
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
0.0.14
16 May 2018 15:13:43
 |
jwb |
biology/fastx-toolkit: Fix build on FreeBSD 12
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D15451 |
0.0.14
31 Jan 2018 01:07:08
|
jwb |
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D14128 |
0.0.14
01 Apr 2016 13:29:17
|
mat |
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight |
0.0.14
24 Mar 2016 14:12:23
|
amdmi3 |
- Clarify LICENSE
- Add LICENSE_FILE
- Remove USES=tar:bzip2 (incorrect and no-op with USE_GITHUB)
- Drop unneeded (and incorrect anyway) PKG_CONFIG_PATH
Approved by: portmgr blanket |
0.0.14
08 Mar 2016 13:09:12
|
mat |
Always set the DEFAULT github DISTFILE with .tar.gz for EXTRACT_SUFX.
Fix distinfo for the offending ports.
lang/yorick's tag was moved, and the added patch was no longer needed.
PR: 207644
Submitted by: mat
Exp-run by by: antoine
Sponsored by: Absolight
Differential Revision: https://reviews.freebsd.org/D4268 |
0.0.14
29 Dec 2015 14:30:47
|
mat |
Cleanup GH_* and variables order.
Sponsored by: Absolight |
0.0.14
11 Dec 2015 08:48:57
|
miwi |
- Update maintainer mail address
- Update/Remove MASTER_SITE
PR: 204755
Submitted by: jwbacon@tds.net (maintainer)
Approved by: mat (mentor)
Differential Revision: D4493 |
0.0.14
25 Sep 2015 18:33:18
|
rm |
The FASTX-Toolkit is a collection of command line tools for Short-Reads
FASTA/FASTQ files preprocessing.
WWW: http://hannonlab.cshl.edu/fastx_toolkit/
PR: 203318
Submitted by: Jason Bacon <jwbacon@tds.net> |
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