| Port details |
- generand Generate random genomic data in FASTA/FASTQ, SAM, or VCF format
- 0.1.2_1 biology
 =2      0.1.2_1Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2021-03-15 20:10:03
- Last Update: 2024-03-02 19:14:06
- Commit Hash: b60356b
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: BSD2CLAUSE
- WWW:
- https://github.com/auerlab/generand
- Description:
- Generate random genomic data in FASTA/FASTQ, SAM, or VCF format, suitable for
small academic examples or test inputs of arbitrary size. Output can be piped
directly to programs or redirected to a file and edited to taste.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- generand>0:biology/generand
- To install the port:
- cd /usr/ports/biology/generand/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/generand
- pkg install generand
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: generand
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1616249064
SHA256 (auerlab-generand-0.1.2_GH0.tar.gz) = 4d728b8dee36381a081022de25d3665297d625479b140fcb05dca87abc382d65
SIZE (auerlab-generand-0.1.2_GH0.tar.gz) = 6782
Packages (timestamps in pop-ups are UTC):
- This port has no dependencies.
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_generand
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 7
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
0.1.2_1
02 Mar 2024 19:14:06
 |
Nuno Teixeira (eduardo) |
biology/generand: Move man pages to share/man
Approved by: portmgr (blanket) |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
0.1.2
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
0.1.2
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
0.1.2
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
0.1.2
20 Mar 2021 14:31:48
 |
jwb |
biology/generand: Update to 0.1.2
Generate proper VCF and SAM headers and valid CIGAR strings |
0.1.1
15 Mar 2021 20:09:28
|
jwb |
biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF format
Generate random genomic data in FASTA/FASTQ, SAM, or VCF format, suitable for
small academic examples or test inputs of arbitrary size. Output can be piped
directly to programs or redirected to a file and edited to taste. |
Number of commits found: 7
|
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