| Port details |
- locarna LocARNA provides several tools for the structural analysis of RNA
- 2.0.0_1 biology
 =2      2.0.0_1Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2023-07-16 21:57:10
- Last Update: 2024-03-03 10:04:08
- Commit Hash: c779176
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: GPLv3
- WWW:
- https://github.com/s-will/LocARNA
- Description:
- LocARNA is a collection of alignment tools for the structural analysis of RNA.
Given a set of RNA sequences, LocARNA simultaneously aligns and predicts common
structures for your RNAs. In this way, LocARNA performs Sankoff-like alignment
and is in particular suited for analyzing sets of related RNAs without known
common structure.
LocARNA distinguishes itself from many other Sankoff-style multiple alignment
programs by its performance and low memory complexity, high accuracy, and
richness of features. As unique features, it offers structure-local alignment,
flexible structure and anchor constraints, and provides efficient computation of
reliabilities in sequence-structure alignment. The package offers a robust core
of features and is used as experimental platform for the incorporation of new
features in RNA sequence-structure alignment.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- locarna>0:biology/locarna
- To install the port:
- cd /usr/ports/biology/locarna/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/locarna
- pkg install locarna
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: locarna
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1689540878
SHA256 (locarna-2.0.0.tar.gz) = 3be0d2cac7f7451f8b741983e22803b546de2074d837b425fb1b69ccc718ebbc
SIZE (locarna-2.0.0.tar.gz) = 3049455
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- libRNA.a : biology/viennarna
- gmake>=4.4.1 : devel/gmake
- pkgconf>=1.3.0_1 : devel/pkgconf
- autoconf>=2.71 : devel/autoconf
- automake>=1.16.5 : devel/automake
- libtoolize : devel/libtool
- perl5>=5.36<5.37 : lang/perl5.36
- Test dependencies:
-
- bash : shells/bash
- catch>0 : devel/catch
- Runtime dependencies:
-
- perl5>=5.36<5.37 : lang/perl5.36
- Library dependencies:
-
- libgmp.so : math/gmp
- libgsl.so : math/gsl
- libmpfr.so : math/mpfr
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_locarna
- USES:
- autoreconf gmake libtool perl5 pkgconfig shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
2.0.0_1
03 Mar 2024 10:04:08
 |
Nuno Teixeira (eduardo) |
biology/locarna: Move man pages to share/man
Approved by: portmgr (blanket) |
2.0.0
14 Dec 2023 07:11:55
|
Yuri Victorovich (yuri) |
biology/locarna: Fix build on 14.x and main
The code uses the STL method that was remved in C++17.
Reported by: fallout |
2.0.0
17 Jul 2023 16:22:42
|
Yuri Victorovich (yuri) |
biology/locarna: Fix tests |
2.0.0
16 Jul 2023 21:54:52
|
Yuri Victorovich (yuri) |
biology/locarna: New port: LocARNA provides several tools for the structural
analysis of RNA |
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