| Port details |
- megahit Ultra-fast single-node large and complex metagenomics assembly
- 1.2.9_1 biology
 =2      1.2.9_1Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2022-11-22 16:42:09
- Last Update: 2022-11-24 14:10:13
- Commit Hash: 4b98707
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: GPLv3
- WWW:
- https://github.com/voutcn/megahit
- Description:
- MEGAHIT is a single node assembler for large and complex metagenomics NGS
reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve
low memory assembly. MEGAHIT can optionally utilize a CUDA-enabled GPU to
accelerate its SdBG contstruction.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- megahit>0:biology/megahit
- To install the port:
- cd /usr/ports/biology/megahit/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/megahit
- pkg install megahit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: megahit
- Flavors: there is no flavor information for this port.
- ONLY_FOR_ARCHS: amd64 powerpc64 powerpc64le riscv64
- distinfo:
- TIMESTAMP = 1669058254
SHA256 (voutcn-megahit-v1.2.9_GH0.tar.gz) = 09026eb07cc4e2d24f58b0a13f7a826ae8bb73da735a47cb1cbe6e4693118852
SIZE (voutcn-megahit-v1.2.9_GH0.tar.gz) = 268591
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- cmake : devel/cmake-core
- ninja : devel/ninja
- python3.9 : lang/python39
- Runtime dependencies:
-
- python3.9 : lang/python39
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_megahit
- USES:
- cmake python shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 2
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.2.9_1
24 Nov 2022 14:10:13
 |
Jason W. Bacon (jwb) |
biology/megahit: Add cmake patch to respect ports build flags
Removes agressive optimizations hard-coded upstream |
1.2.9
22 Nov 2022 16:39:22
|
Jason W. Bacon (jwb) |
biology/megahit: Ultra-fast single-node metagenomics assembly
MEGAHIT is a single node assembler for large and complex metagenomics
NGS reads, such as soil. It makes use of succinct de Bruijn graph
(SdBG) to achieve low memory assembly. MEGAHIT can optionally utilize
a CUDA-enabled GPU to accelerate its SdBG contstruction. |
Number of commits found: 2
|
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