biology/mopac: Move to science/mopac; Add TIMESTAMP to distinfo; Take
maintainership

Remove # $FreeBSD$ from Makefiles.

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).

Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275

Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry

Convert LICENSE= "GPLxx # or later" to "GPLxx+"

Approved by:	portmgr blanket

- Upadate biology/mopac to version 1.15
- Bump affected ports
- Switch ports to new mastersite, add LICENSE
- Reformat ports pkg descriptions

PR:		194493
Submitted by:	tkato432@yahoo.com

Cleanup plist

- Switch to USES=libtool, drop .la files

Approved by:	portmgr blanket

- Add staging support
- Strip library

- Convert USE_GMAKE to USES

In preparation for making libtool generate libraries with a sane name, fix all
LIB_DEPENDS in biology

Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)

- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)

. NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES;
. use PORTEXAMPLES at Makefile;
. trim Makefile headers.

Workaround the way mopac installs executables.

PR:		ports/171932
Reported by:	Jinsong Zhao <jszhao yeah net>

- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:             157936
Submitted by:   myself
Exp-runs by:    pav
Approved by:    pav

- Get Rid MD5 support

Sync to new bsd.autotools.mk

Punt autoconf267->autoconf268

Round one migration of ports from automake{19,110} to automake111

Autotools update.   Read ports/UPDATING 20100915 for details.

Approved by:    portmgr (for Mk/bsd.port.mk part)
Tested by:      Multiple -exp runs

- Update to 7.1.11

PR:             141812
Submitted by:   Ports Fury

- Mark MAKE_JOBS_UNSAFE

Reported by:    pointyhat

- Switch SourceForge ports to the new File Release System: categories starting
with B,C

Add -lf2c, this is the correct dependency. Bump portrevision.

- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default
MAKE_ENV

- Fix pkg-plist [1]
- pet portlint(1)

Noticed by:     pointyhat via linimon [1]

- Use the correct MASTER_SITE_SUBDIR, make it fetchable

PR:             99757
Submitted by:   Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw>
Approved by:    delphij (mentor, implicit)

Update to 1.10 (maintained by others) and unbreak.

Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about
maintainer timeouts.

Hat:    portmgr

SHA256ify (manually done and checked)

Approved by:    krion@

At Kris's request, back out the MACHINE_ARCH spelling correction until
after 5.4-RELEASE.

Assist getting more ports working on AMD64 by obeying the
Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'.

BROKEN on 5.x: Does not install

Approved by:    portmgr (self)

[PATCH] biology/mopac patchsite fix

        this is a followup to ports/67432

        I completely overlooked the fact that the port was setting
        PATCH_SITES, here's a fix for that

        maintainer cc'd

PR:             ports/67441
Submitted by:   Roman Neuhauser <neuhauser@chello.cz>

[PATCH] biology/mopac distsite fix

        connection refused (portsurvey reports timeouts)

PR:             ports/67432
Submitted by:   Roman Neuhauser <neuhauser@chello.cz>

SIZEify (maintainer timeout)

Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)

Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992

De-pkg-comment.

Add NOPORTDOCS support to pkg-plist    

Convert category biology to new layout.  

fc is ftn77 now, adjust accordingly.    

Convert to usable F77 binary, especially on 4.0 and newer.