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Port details
mothur Software for bioinformatics of the microbial ecology community
1.48.2 biology on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.48.1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-05-20 17:59:35
Last Update: 2024-11-05 07:25:49
Commit Hash: 46492d92
People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
License: GPLv3
WWW:
https://www.mothur.org/
Description:
This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
Collapse this list.
  1. bin/mothur
  2. /usr/local/share/licenses/mothur-1.48.2/catalog.mk
  3. /usr/local/share/licenses/mothur-1.48.2/LICENSE
  4. /usr/local/share/licenses/mothur-1.48.2/GPLv3
Collapse this list.
Dependency lines:
  • mothur>0:biology/mothur
To install the port:
cd /usr/ports/biology/mothur/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/mothur
  • pkg install mothur
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: mothur
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1730779630 SHA256 (mothur-mothur-v1.48.2_GH0.tar.gz) = bd37b22b5d2629c5f44bd7f104c5e5a2c3a117d724cd113ec7526c4aa62e1793 SIZE (mothur-mothur-v1.48.2_GH0.tar.gz) = 24702253
Packages (timestamps in pop-ups are UTC):
mothur
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.48.21.48.21.43.01.48.21.48.2-1.43.0-
FreeBSD:13:quarterly1.48.11.48.11.48.01.48.11.48.11.48.01.48.01.48.0
FreeBSD:14:latest1.48.21.48.21.48.01.48.21.48.21.48.0-1.48.0
FreeBSD:14:quarterly1.48.11.48.1-1.48.11.48.11.48.01.48.01.48.0
FreeBSD:15:latest1.48.21.48.2n/a1.48.2n/a1.48.01.48.01.48.0
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. bash : shells/bash
  2. gmake>=4.4.1 : devel/gmake
  3. llvm-config15 : devel/llvm15
Library dependencies:
  1. libreadline.so.8 : devel/readline
There are no ports dependent upon this port
Configuration Options:
No options to configure
Options name:
biology_mothur
USES:
compiler:c++11-lang gmake localbase readline llvm:max=15
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/mothur/mothur/tar.gz/v1.48.2?dummy=/
Collapse this list.

Number of commits found: 24

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.48.2
05 Nov 2024 07:25:49
commit hash: 46492d92adaeec56498bd555a9f95839cfd6e4a3commit hash: 46492d92adaeec56498bd555a9f95839cfd6e4a3commit hash: 46492d92adaeec56498bd555a9f95839cfd6e4a3commit hash: 46492d92adaeec56498bd555a9f95839cfd6e4a3 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/mothur: update 1.48.1 → 1.48.2
1.48.1
01 Oct 2024 18:56:20
commit hash: 4485bd8221c2c5630b87826d37da850b3361b782commit hash: 4485bd8221c2c5630b87826d37da850b3361b782commit hash: 4485bd8221c2c5630b87826d37da850b3361b782commit hash: 4485bd8221c2c5630b87826d37da850b3361b782 files touched by this commit		 Rene Ladan (rene) search for other commits by this committer 
all: drop support for expired FreeBSD 14.0

Simplify expressions for FreeBSD 13.X

Reviewed by:	many

Differential Revision:	https://reviews.freebsd.org/D46601
1.48.1
16 May 2024 08:56:44
commit hash: c0deeb0a3f32d7ecf4e05d39effcb4e16f5d9b1ccommit hash: c0deeb0a3f32d7ecf4e05d39effcb4e16f5d9b1ccommit hash: c0deeb0a3f32d7ecf4e05d39effcb4e16f5d9b1ccommit hash: c0deeb0a3f32d7ecf4e05d39effcb4e16f5d9b1c files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/mothur: update 1.48.0 → 1.48.1

Reported by:	portscout
1.48.0
28 Sep 2023 18:56:25
commit hash: db3d647fdea3f2208f0c84465b0194d7e5bf4904commit hash: db3d647fdea3f2208f0c84465b0194d7e5bf4904commit hash: db3d647fdea3f2208f0c84465b0194d7e5bf4904commit hash: db3d647fdea3f2208f0c84465b0194d7e5bf4904 files touched by this commit		 Muhammad Moinur Rahman (bofh) search for other commits by this committer 
biology/mothur: Remove CC/CPP/CXX exports

USES=llvm now by default exports CC/CPP/CXX so remove those
Approved by:	portmgr (blanket)
1.48.0
18 Aug 2023 06:57:12
commit hash: a5b5a22ade5713b3b2f9bddcb6fa95fe4aa51b9ccommit hash: a5b5a22ade5713b3b2f9bddcb6fa95fe4aa51b9ccommit hash: a5b5a22ade5713b3b2f9bddcb6fa95fe4aa51b9ccommit hash: a5b5a22ade5713b3b2f9bddcb6fa95fe4aa51b9c files touched by this commit		 Muhammad Moinur Rahman (bofh) search for other commits by this committer 
biology/mothur: Fix build on 14

Approved by:	portmgr (blanket)
Sponsored by:	The FreeBSD Foundation
1.48.0
15 Aug 2023 07:42:10
commit hash: ec80eff163d354e6b456edf9bf1f14a40e82abcacommit hash: ec80eff163d354e6b456edf9bf1f14a40e82abcacommit hash: ec80eff163d354e6b456edf9bf1f14a40e82abcacommit hash: ec80eff163d354e6b456edf9bf1f14a40e82abca files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/mothur: Fix build with clang-16

Reported by:	fallout
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit		 Stefan Eßer (se) search for other commits by this committer 
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.48.0
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit		 Stefan Eßer (se) search for other commits by this committer 
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.48.0
20 May 2022 02:10:18
commit hash: a19ac12c2c4232afcb406301472531f035e6058dcommit hash: a19ac12c2c4232afcb406301472531f035e6058dcommit hash: a19ac12c2c4232afcb406301472531f035e6058dcommit hash: a19ac12c2c4232afcb406301472531f035e6058d files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/mothur: Update 1.47.0 -> 1.48.0

Reported by:	portscout
1.47.0
21 Jan 2022 17:14:38
commit hash: d6021375f3358d44caf7929042dc1c0cf6292726commit hash: d6021375f3358d44caf7929042dc1c0cf6292726commit hash: d6021375f3358d44caf7929042dc1c0cf6292726commit hash: d6021375f3358d44caf7929042dc1c0cf6292726 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/mothur: Update 1.46.1 -> 1.47.0

Reported by:	portscout
1.46.1
02 Sep 2021 09:29:56
commit hash: 03cb17ef46adf1223603a06606c79c8b7fb98f42commit hash: 03cb17ef46adf1223603a06606c79c8b7fb98f42commit hash: 03cb17ef46adf1223603a06606c79c8b7fb98f42commit hash: 03cb17ef46adf1223603a06606c79c8b7fb98f42 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/mothur: Update 1.46.0 -> 1.46.1

Reported by:	portscout
1.46.0
26 Aug 2021 17:45:39
commit hash: 2c2bb694d2eb99085eedcb2d93b69d601ba2a36fcommit hash: 2c2bb694d2eb99085eedcb2d93b69d601ba2a36fcommit hash: 2c2bb694d2eb99085eedcb2d93b69d601ba2a36fcommit hash: 2c2bb694d2eb99085eedcb2d93b69d601ba2a36f files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/mothur: Update 1.45.3 -> 1.46.0

Reported by:	portscout
1.45.3
09 May 2021 16:11:11
commit hash: 4e8265c62483e7ac9bd87f401fd318418d8b2a86commit hash: 4e8265c62483e7ac9bd87f401fd318418d8b2a86commit hash: 4e8265c62483e7ac9bd87f401fd318418d8b2a86commit hash: 4e8265c62483e7ac9bd87f401fd318418d8b2a86 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/mothur: Update 1.45.2 -> 1.45.3

Reported by:	portscout
1.45.2
13 Apr 2021 00:29:17
commit hash: fd20bf82b699c91e1ddc0b92ddc98b038483c706commit hash: fd20bf82b699c91e1ddc0b92ddc98b038483c706commit hash: fd20bf82b699c91e1ddc0b92ddc98b038483c706commit hash: fd20bf82b699c91e1ddc0b92ddc98b038483c706 files touched by this commit		 Jason W. Bacon (jwb) search for other commits by this committer 
biology/mothur: Update to 1.45.2

Numerous bug fixes and enhancements since 1.43.0

Approved by:    yuri
1.43.0
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit		 Mathieu Arnold (mat) search for other commits by this committer 
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
1.43.0
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit		 Mathieu Arnold (mat) search for other commits by this committer 
Remove # $FreeBSD$ from Makefiles.
1.43.0
19 Oct 2020 10:30:11
Revision:552729Original commit files touched by this commit		 pkubaj search for other commits by this committer 
biology/mothur: fix build on powerpc64le

New PPC hardware usually uses little-endian systems. Let __BIG_ENDIAN__ and
__LITTLE_ENDIAN__ define endianness.
1.43.0
09 May 2020 19:24:50
Revision:534792Original commit files touched by this commit		 tijl search for other commits by this committer 
Update devel/gmake to 4.3.

Some changes have been made in this release that break backwards
compatibility.  Let USES=gmake force users to upgrade to this version so
port maintainers don't have to support older versions.

PR:		245725
Exp-run by:	antoine
Approved by:	portmgr (antoine)
1.43.0
05 Oct 2019 17:04:43
Revision:513838Original commit files touched by this commit		 yuri search for other commits by this committer 
biology/mothur: Update 1.42.3 -> 1.43.0

Reported by:	portscout
1.42.3_1
26 Jul 2019 20:46:57
Revision:507372Original commit files touched by this commit		 gerald search for other commits by this committer 
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
1.42.3
28 Jun 2019 04:02:22
Revision:505257Original commit files touched by this commit		 yuri search for other commits by this committer 
biology/mothur: Update 1.42.2 -> 1.42.3

Reported by:	portscout
1.42.2
19 Jun 2019 23:54:44
Revision:504606Original commit files touched by this commit		 yuri search for other commits by this committer 
biology/mothur: Update 1.42.1-3 -> 1.42.2
1.42.1.3
20 May 2019 21:20:56
Revision:502174Original commit files touched by this commit		 yuri search for other commits by this committer 
biology/mothur: Add USES=compiler:c++11-lang
1.42.1.3
20 May 2019 17:59:18
Revision:502128Original commit files touched by this commit		 yuri search for other commits by this committer 
New port: biology/mothur: Software for bioinformatics of the microbial ecology
community

Number of commits found: 24
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