NGS is a new, domain-specific API for accessing reads, alignments and pileups
produced from Next Generation Sequencing. The API itself is independent from any
particular back-end implementation, and supports use of multiple back-ends
simultaneously. It also provides a library for building new back-end "engines".
The engine for accessing SRA data is contained within the sister repository
ncbi-vdb.
The API is currently expressed in C++, Java and Python languages. The design
makes it possible to maintain a high degree of similarity between the code in
one language and code in another - especially between C++ and Java.
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
biology/ngs-sdk: Revert: Un-remove, ngs was moved into sra-tools
This reverts commit 1cb8897f610a381ddf2802eb09acfba97b15b505.
sra-tools needs to be updated first.
Reported by: Tomoaki AOKI <junchoon@dec.sakura.ne.jp>, perciva@
biology/ngs-sdk: Restore static libs installed with symlinks as shared libs are
usually installed
Symlinks like this libxx.a->libxx.a.N.N.N first looked broken but it turned out
that this is intentional.
For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
them BROKEN.
While here, pet portlint (Makevar order).
Approved by: portmgr (tier-2 blanket)
Mark this port as not buildable on powerpc64:
*** File 'Makefile.config.FreeBSD.powerpc' is missing. Please run ./configure
The configuration script may have other problems as well. This needs
to be addressed by upstream (if there is interest).
Approved by: portmgr (tier-2 blanket)
