Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>

Remove # $FreeBSD$ from Makefiles.

Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)

Update WWW

search.cpan.org is shutting down.
It will redirect to metacpan.org after June 25, 2018.

With hat:	perl

Fix license information for portgs that use "the same license as Perl".

Sponsored by:	Absolight

Move -fPIC to where Linux puts it so it is limited to a single library.

Add -fPIC to various ports to enable them to build on armv6.

Approved by:	portmgr (tier-2 blanket)

Mark various leaf ports broken on aarch64, and, where appropriate, other
tier-2 archs.

Approved by:	portmgr (tier-2 blanket)

Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight

Make it so that the default Perl is always called perl5.

- Move Perl's man1 files along with its man3 files.
- Move where Perl installs its modules man1 pages.
- Convert the ports installing man1 pages.
- Make different Perl versions installable at the same time.
  Though you should note that only the default version can be used to
  install Perl modules, and the non default Perl versions cannot use the
  modules installed via ports if they contain .so as they are installed
  in a version specific directory.

Reviewed by:	bapt (the Mk bits)
Exp-run by:	antoine
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D3542

After r390893, chmod u+w/u-w for stripping perl XS modules is unnecessary,
and in fact now leads to incorrect permissions.

Remove all instances of it from perl@ ports.

Reassign biology/ perl modules to perl@.

While here:

Regenerate p5-AcePerl's patches using makepatch.
Make p5-Bio-ASN1-EntrezGene depend on p5-bioperl, instead of the
other way around. Bump PORTREVISION on those two ports.

- Add LICENSE
- Space/Tab fix

- Simplify MASTER_SITES
- Strip libraries

Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the

Cleanup plist

Fix build. Hopefully it doesn't break the app.

Rename biology/ patch-xy patches to reflect the files they modify.

Remove all the bootstrap files (.bs) from the plists.

Starting with perl 5.20, they're not installed any more if empty,
and on FreeBSD, they're (always ?) empty.

PR:		190681
Submitted by:	mat
Exp-Run by:	antoine
Sponsored by:	Absolight

- Stage support

Update WWW

Drop maintainership on those.

Sponsored by:	Absolight

Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)

- Add WWW
- Use single space after WWW:
- Remove Author line

- Convert to new perl framework
- Trim Makefile header
- Remove MAKE_JOBS_SAFE=yes, it's the default.

- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
  RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned
  about for a while.

PR:             ports/168208
Approved by:    portmgr (miwi)

- Remove SITE_PERL from *_DEPENDS

- remove maintainer tags from pkg-descr

Approved by:    portmgr
Approved by:    bapt (mentor)

- Get Rid MD5 support

- Remove unneeded dependencies which is in perl-5.8.9 dist
  (part 19; last!).

Approved by:    portmgr (itetcu)

- Remove unneeded dependencies which is in perl-5.8.9 dist from ports
  maintained by (perl|ports|kuriyama)@FreeBSD.org.

- Targets are: Test::Simple, Digest::MD5, Locale-Maketext,
  ExtUtils::MakeMaker, ExtUtils::ParseXS, File::Temp, Getopt::Long,
  Encode, Digest, Pod::Parser, File::Spec.

- Turn over a bunch of p5- ports that change infrequently to perl@
  so more people can look at them.

- Flip MAKE_JOBS_SAFE to MAKE_JOBS_UNSAFE

Reported by:    pointyhat

- Mark most of my ports MAKE_JOBS_SAFE=yes

Tested by: several builds in P6 TB

- Remove conditional checks relevant only on FreeBSD 5.x and older

Update to 1.92
Changes http://search.cpan.org/src/LDS/AcePerl-1.92/ChangeLog

Approved by:    gabor (mentor)

Update my ports to my freebsd address

Approved by:    araujo (mentor)

- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.

PR:             ports/122674
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    portmgr (pav)

Welcome bsd.perl.mk.  Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.

Work done by:   gabor
Sponsored by:   Google Summer of Code 2007
Hat:            portmgr

- Mark broken on amd64 < 6. We got following

cc -O -pipe  -fPIC  -g -Wall -DACEDB4  -I. -I./wh -DFREEBSD -c -O -pipe  -fPIC 
-g -Wall -DACEDB4 -c arraysub.c
arraysub.c: In function `stackused':
arraysub.c:54: error: unrecognizable insn:
(insn 44 22 24 2 arraysub.c:53 (set (reg:SI 1 dx [66])
        (subreg:SI (plus:DI (subreg:DI (reg:SI 7 sp) 0)
                        (const_int -1 [0xffffffffffffffff])) 0)) -1 (nil)
                            (nil))
arraysub.c:54: internal compiler error: in extract_insn, at recog.c:2083

Reported by:    pointyhat via kris
Approved by:    Philip M. Gollucci (maintainer)

- Update to 1.91
- Unbreak on amd64

PR:             ports/105414
Submitted by:   rafan
Approved by:    maintainer timeout (15 days)

- Update to 1.89
- refine BROKEN to make portlint happier
- patch to use on Scalar::Util instead of WeakRef
- mark IGNORE under old perl which don't support weak reference

PR:             96656
Submitted by:   leeym
Approved by:    maintainer

SHA256ify

Approved by:    krion@

- Change maintainer's email address.

- Honor CFLAGS

PR:             ports/65599
Submitted by:   michael johnson <ahze at ahze dot net>

SIZEify (maintainer timeout)

BROKEN on amd64 and ia64: Does not compile (missing -fPIC)

utilize SITE_PERL

PR:             58166
Submitted by:   Cheng-Lung Sung <clsung@dragon2.net>

- update to 1.83
- give maintainership to submitter as the old maintainer's
  address bounces

PR:             52054
Submitted by:   Philip M. Gollucci <philip@p6m7g8.com>
Approved by:    maintainer bounces

De-pkg-comment.

Add dependency on security/p5-Digest-MD5
Noticed on: bento

CC, CXX, CFLAGS, PTHREAD_CFLAGS and PTHREAD_LIBS may contain `/' in
them when using a non-default compiler/linker, so do not use `/' as
delimiter for s///. (I picked `|' instead)

- Update to version 1.82    

Update to version 1.75    

- Upgrade to version 1.70   - Update WWW    

Remove do-configure section, use PERL_CONFIGURE now.    

- Update biology/p5-AcePerl from 1.62 to 1.67   - Alphabetise ${PLIST} to ease
future maintenance   - Port now compiles in XS optimisations and RPC server
interface   - Port now honours ${CC} properly, also for compiled extensions   -
Port now uses PERL_CONFIGURE   - Hand over port MAINTAINERship to FreeBSD
bio-porters mailing list    

Convert category biology to new layout.  

Add p5-AcePerl, a perl interface to the ACEDB genome database system