| Port details |
- p5-Bio-DB-NCBIHelper Collection of routines useful for queries to NCBI databases
- 1.7.8 biology
 =2      1.7.8Version of this port present on the latest quarterly branch. - Maintainer: sunpoet@FreeBSD.org
- Port Added: 2019-12-08 16:52:43
- Last Update: 2023-12-25 08:59:52
- Commit Hash: 4107132
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- Also Listed In: perl5
- License: ART10 GPLv1+
- WWW:
- https://metacpan.org/release/Bio-DB-NCBIHelper
- Description:
- Bio::DB::NCBIHelper provides a single place to setup some common methods for
querying NCBI web databases. This module just centralizes the methods for
constructing a URL for querying NCBI GenBank and NCBI GenPept and the common
HTML stripping done in postprocess_data().
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- p5-Bio-DB-NCBIHelper>0:biology/p5-Bio-DB-NCBIHelper
- To install the port:
- cd /usr/ports/biology/p5-Bio-DB-NCBIHelper/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/p5-Bio-DB-NCBIHelper
- pkg install p5-Bio-DB-NCBIHelper
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: p5-Bio-DB-NCBIHelper
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1703227832
SHA256 (Bio-DB-NCBIHelper-1.7.8.tar.gz) = f8e2a739c872608a24003a642a686b6e9c72af59a3bc0aceea6e5a5c2ea5ecbf
SIZE (Bio-DB-NCBIHelper-1.7.8.tar.gz) = 45770
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- p5-Bio-ASN1-EntrezGene>=0 : biology/p5-Bio-ASN1-EntrezGene
- p5-BioPerl>=1.007007 : biology/p5-BioPerl
- p5-CGI>=0 : www/p5-CGI
- p5-Cache-Cache>=0 : devel/p5-Cache-Cache
- p5-HTTP-Message>=0 : www/p5-HTTP-Message
- p5-LWP-Protocol-https>=0 : www/p5-LWP-Protocol-https
- p5-URI>=0 : net/p5-URI
- p5-XML-Twig>=0 : textproc/p5-XML-Twig
- p5-libwww>=0 : www/p5-libwww
- perl5>=5.36<5.37 : lang/perl5.36
- perl5>=5.36<5.37 : lang/perl5.36
- Test dependencies:
-
- p5-Test-Exception>=0 : devel/p5-Test-Exception
- p5-Test-Most>=0 : devel/p5-Test-Most
- p5-Test-RequiresInternet>=0 : devel/p5-Test-RequiresInternet
- Runtime dependencies:
-
- p5-Bio-ASN1-EntrezGene>=0 : biology/p5-Bio-ASN1-EntrezGene
- p5-BioPerl>=1.007007 : biology/p5-BioPerl
- p5-CGI>=0 : www/p5-CGI
- p5-Cache-Cache>=0 : devel/p5-Cache-Cache
- p5-HTTP-Message>=0 : www/p5-HTTP-Message
- p5-LWP-Protocol-https>=0 : www/p5-LWP-Protocol-https
- p5-URI>=0 : net/p5-URI
- p5-XML-Twig>=0 : textproc/p5-XML-Twig
- p5-libwww>=0 : www/p5-libwww
- perl5>=5.36<5.37 : lang/perl5.36
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_p5-Bio-DB-NCBIHelper
- USES:
- perl5
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 7
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.7.8
25 Dec 2023 08:59:52
 |
Po-Chuan Hsieh (sunpoet) |
biology/p5-Bio-DB-NCBIHelper: Update to 1.7.8
- Update LICENSE_FILE
Changes: https://metacpan.org/dist/Bio-DB-NCBIHelper/changes |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.7.7
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.7.7
20 Jul 2022 14:20:57
|
Tobias C. Berner (tcberner) |
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above ) |
1.7.7
06 Jul 2021 14:56:10
|
Po-Chuan Hsieh (sunpoet) |
biology/p5-Bio-DB-NCBIHelper: Update to 1.7.7
Changes: https://metacpan.org/dist/Bio-DB-NCBIHelper/changes |
1.7.6
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.7.6
08 Dec 2019 16:49:25
 |
sunpoet |
Add p5-Bio-DB-NCBIHelper 1.7.6
Bio::DB::NCBIHelper provides a single place to setup some common methods for
querying NCBI web databases. This module just centralizes the methods for
constructing a URL for querying NCBI GenBank and NCBI GenPept and the common
HTML stripping done in postprocess_data().
WWW: https://metacpan.org/release/Bio-DB-NCBIHelper |
Number of commits found: 7
|
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