Port details |
- p5-Bio-Das Client-side library for Distributed Genome Annotation System
- 1.17_4 biology =2 1.17_4Version of this port present on the latest quarterly branch.
- Maintainer: perl@FreeBSD.org
- Port Added: 2005-09-01 13:10:39
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- Also Listed In: perl5
- License: ART10 GPLv1+
- WWW:
- https://metacpan.org/release/Bio-Das
- Description:
- Bio::Das provides access to genome sequencing and annotation databases
that export their data in Distributed Annotation System (DAS) format
version 1.5. This system is described at http://biodas.org. Both
unencrypted (http:) and SSL-encrypted (https:) DAS servers are sup-
ported. (To run SSL, you will need IO::Socket::SSL and Net::SSLeay
installed).
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- p5-Bio-Das>0:biology/p5-Bio-Das
- To install the port:
- cd /usr/ports/biology/p5-Bio-Das/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/p5-Bio-Das
- pkg install p5-Bio-Das
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: p5-Bio-Das
- Flavors: there is no flavor information for this port.
- distinfo:
- SHA256 (Bio-Das-1.17.tar.gz) = cfe4980e47021e69ae3ba26c88dde29aef10f934f5ca10e9ffd1a99b472792f7
SIZE (Bio-Das-1.17.tar.gz) = 105270
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- p5-BioPerl>=0 : biology/p5-BioPerl
- p5-HTML-Parser>=3 : www/p5-HTML-Parser
- p5-libwww>=5 : www/p5-libwww
- perl5>=5.32.r0<5.33 : lang/perl5.32
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Runtime dependencies:
-
- p5-BioPerl>=0 : biology/p5-BioPerl
- p5-HTML-Parser>=3 : www/p5-HTML-Parser
- p5-libwww>=5 : www/p5-libwww
- perl5>=5.32.r0<5.33 : lang/perl5.32
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- biology_p5-Bio-Das
- USES:
- perl5
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
Commit | Credits | Log message |
07 Sep 2022 21:58:51 |
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.17_4 07 Sep 2022 21:10:59 |
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above ) |
1.17_4 20 Jul 2022 14:20:57 |
Tobias C. Berner (tcberner) |
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above ) |
1.17_4 06 Apr 2021 14:31:07 |
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.17_4 06 Oct 2018 13:06:45 |
des |
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.
Approved by: portmgr (adamw) |
1.17_4 27 May 2018 20:15:20 |
sunpoet |
Update WWW
search.cpan.org is shutting down.
It will redirect to metacpan.org after June 25, 2018.
With hat: perl |
1.17_4 15 Sep 2017 08:58:50 |
mat |
Fix license information for portgs that use "the same license as Perl".
Sponsored by: Absolight |
1.17_4 18 Dec 2016 15:25:18 |
sunpoet |
- Add LICENSE
- Add NO_ARCH
- Sort *_DEPENDS
- Bump PORTREVISION for biology/p5-bioperl renaming |
1.17_3 01 Apr 2016 13:29:17 |
mat |
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight |
1.17_3 26 Nov 2014 13:08:38 |
mat |
Change the way Perl modules are installed, update the default Perl to 5.18.
Before, we had:
site_perl : lib/perl5/site_perl/5.18
site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
perl_man3 : lib/perl5/5.18/man/man3
Now we have:
site_perl : lib/perl5/site_perl
site_arch : lib/perl5/site_perl/mach/5.18
perl_man3 : lib/perl5/site_perl/man/man3
Modules without any .so will be installed at the same place regardless of the (Only the first 15 lines of the commit message are shown above ) |
1.17_2 20 Oct 2014 07:10:48 |
bapt |
Cleanup plist |
1.17_2 05 Jan 2014 12:07:21 |
az |
- support stage |
1.17_2 20 Sep 2013 15:55:44 |
bapt |
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology) |
1.17_2 02 Aug 2013 18:52:11 |
mat |
- Convert to new perl framework
- Trim Makefile header
- Remove MAKE_JOBS_SAFE=yes, it's the default. |
1.17_2 17 Dec 2012 15:39:36 |
az |
Cleanup supporting perl version 5.8 and 5.10,
lang/perl5.8 and lang/5.10 will be removed from ports tree soon. |
1.17_2 10 Jun 2012 18:42:48 |
swills |
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned
about for a while.
PR: ports/168208
Approved by: portmgr (miwi) |
1.17_2 01 Jun 2012 05:26:28 |
dinoex |
- update png to 1.5.10 |
1.17_1 13 Mar 2012 16:15:36 |
pgollucci |
- Revert ports/165605 as requested by portmgr@
Note: devel/p5-B-Size and devel/p5-Devel-Arena
where intentionally not restored.
PR: ports/165605
Approved by: portmgr (bapt)
Feature safe: yes (I sure hope so) |
1.17_1 08 Mar 2012 18:45:38 |
pgollucci |
- Remove ports that only work with < perl 5.12 (devel/p5-B-Size,
devel/p5-Devel-Arena)
- Remove conditionals for PERL_LEVEL < 501200
- Remove regression-test targets b/c this will be centralized in Mk/bsd.perl.mk
- Other minor cleanups
RUN_DEPENDS = ${BUILD_DEPENDS} -> RUN_DEPENDS:= ${BUILD_DEPENDS}
PR: ports/165605
Submitted by: pgollucci (myself)
Approved by: portmgr (linimon)
Exp Run by: linimon
Tested by: make index |
1.17_1 22 Oct 2011 23:50:23 |
eadler |
- remove maintainer tags from pkg-descr
Approved by: portmgr
Approved by: bapt (mentor) |
1.17_1 19 Mar 2011 12:38:54 |
miwi |
- Get Rid MD5 support |
1.17_1 21 Sep 2010 07:56:43 |
mm |
Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base,
p5-IO-Compress-Zlib and p5-IO-Compress-Bzip2 modules to p5-IO-Compress.
Explicitly depend on p5-IO-Compress only if PERL_LEVEL < 500903
Bump PORTREVISION |
1.17 30 Jun 2010 07:36:25 |
wen |
- Update to 1.17
Feature safe: yes |
1.16 24 Jun 2010 00:24:22 |
wen |
- Update to 1.16
Feature safe: yes |
1.15 12 Jun 2010 06:18:36 |
wen |
- Update to 1.15 |
1.14_2 28 Mar 2010 06:47:48 |
dinoex |
- update to 1.4.1
Reviewed by: exp8 run on pointyhat
Supported by: miwi |
1.14_1 05 Feb 2010 11:46:55 |
dinoex |
- update to jpeg-8 |
1.14 08 Sep 2009 12:08:12 |
jadawin |
- Update to 1.14 |
1.12 27 Aug 2009 20:34:58 |
miwi |
- Update to 1.12
PR: 138230
Submitted by: Wen Heping <wenheping@gmail.com> |
1.11_1 31 Jul 2009 13:57:52 |
dinoex |
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by: edwin |
1.11 22 Jul 2009 16:27:08 |
pgollucci |
- lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checks
PR: ports/135398
Tested by: 2 -exp runs by pav
Approved by: portmgr (pav) |
1.11 08 Jun 2009 09:30:07 |
jadawin |
- Update to 1.11 |
1.10 11 Dec 2008 05:19:13 |
leeym |
- update to 1.10 |
1.09 31 May 2008 13:46:14 |
miwi |
- Update to 1.09 |
1.08 23 May 2008 12:22:21 |
mat |
Update to 1.08 |
1.07 19 May 2008 13:12:08 |
araujo |
- Include some ports in perl5 category.
PR: ports/123530
Submitted by: Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by: araujo (myself)
Approved by: flz (portmgr) |
1.07 17 Apr 2008 14:30:31 |
araujo |
- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.
PR: ports/122674
Submitted by: Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by: araujo (myself)
Approved by: portmgr (pav) |
1.07 12 Mar 2008 12:24:10 |
miwi |
- Update to 1.07 |
1.06 07 Sep 2007 14:45:12 |
miwi |
- Update to 1.06
- Remove 4.X cruft |
1.03_1 19 May 2007 20:32:57 |
flz |
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}. |
1.03 14 Mar 2007 08:18:21 |
linimon |
Reset razi@genet.sickkids.on.ca due to maintainer-timeouts and no response to
email.
Hat: portmgr |
1.03 19 Dec 2006 06:47:45 |
rafan |
- Update to 1.03
PR: ports/106300
Submitted by: chinsan
Approved by: maintainer timeout (15 days) |
1.02 03 Dec 2006 12:45:59 |
demon |
Correct path to Compress::Zlib.pm after recent p5-Compress-Zlib update. |
1.02 22 Jan 2006 08:20:34 |
edwin |
SHA256ify
Approved by: krion@ |
1.02 05 Jan 2006 22:31:12 |
pav |
- Remove symlinks that belong to mtree
Approved by: maintainers |
1.02 26 Nov 2005 03:40:59 |
fenner |
Add the right MASTER_SITE_SUBDIR, so that this port is fetchable from
20 sites instead of just 1. |
1.02 01 Sep 2005 13:09:33 |
garga |
Add p5-Bio-Das 1.02, client-side library for Distributed Genome
Annotation System.
PR: ports/76379
Submitted by: Razi Khaja <razi@genet.sickkids.on.ca> |