Port details |
- p5-Bio-GFF3 Fast low-level functions for parsing and formatting GFF3
- 2.0_2 biology
=2 2.0_2Version of this port present on the latest quarterly branch. - Maintainer: perl@FreeBSD.org
![search for ports maintained by this maintainer search for ports maintained by this maintainer](/images/search.jpg) - Port Added: 2011-04-22 08:51:49
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- Also Listed In: perl5
- License: ART10 GPLv1+
- WWW:
- https://metacpan.org/release/Bio-GFF3
- Description:
- Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files.
All they do is convert back and forth between low-level Perl data
structures and GFF3 text.
¦ ¦ ¦ ¦ ![SVNWeb SVNWeb](/images/subversion.png)
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- p5-Bio-GFF3>0:biology/p5-Bio-GFF3
- To install the port:
- cd /usr/ports/biology/p5-Bio-GFF3/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/p5-Bio-GFF3
- pkg install p5-Bio-GFF3
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: p5-Bio-GFF3
- Flavors: there is no flavor information for this port.
- distinfo:
- SHA256 (Bio-GFF3-2.0.tar.gz) = cbfef8376d3d9026483360150e3745a27dad78e995348d0c08ef5b2e4374170c
SIZE (Bio-GFF3-2.0.tar.gz) = 74951
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- p5-File-ReadBackwards>=0 : devel/p5-File-ReadBackwards
- p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
- p5-URI>=0 : net/p5-URI
- perl5>=5.32.r0<5.33 : lang/perl5.32
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Runtime dependencies:
-
- p5-File-ReadBackwards>=0 : devel/p5-File-ReadBackwards
- p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
- p5-URI>=0 : net/p5-URI
- perl5>=5.32.r0<5.33 : lang/perl5.32
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- biology_p5-Bio-GFF3
- USES:
- perl5
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
Commit | Credits | Log message |
07 Sep 2022 21:58:51
![commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4](/images/git.png) ![commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4](/images/codeberg.svg) ![commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4](/images/github.svg) ![files touched by this commit files touched by this commit](/images/logs.gif) |
Stefan Eßer (se) ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
2.0_2 07 Sep 2022 21:10:59
![commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52](/images/git.png) ![commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52](/images/codeberg.svg) ![commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52](/images/github.svg) ![files touched by this commit files touched by this commit](/images/logs.gif) |
Stefan Eßer (se) ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above ) |
2.0_2 20 Jul 2022 14:20:57
![commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671](/images/git.png) ![commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671](/images/codeberg.svg) ![commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671](/images/github.svg) ![files touched by this commit files touched by this commit](/images/logs.gif) |
Tobias C. Berner (tcberner) ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above ) |
2.0_2 06 Apr 2021 14:31:07
![commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb](/images/git.png) ![commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb](/images/codeberg.svg) ![commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb](/images/github.svg) ![files touched by this commit files touched by this commit](/images/logs.gif) |
Mathieu Arnold (mat) ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
Remove # $FreeBSD$ from Makefiles. |
2.0_2 06 Oct 2018 13:06:45
![Revision:481365 Revision:481365](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
des ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.
Approved by: portmgr (adamw) |
2.0_2 27 May 2018 20:15:20
![Revision:470993 Revision:470993](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
sunpoet ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
Update WWW
search.cpan.org is shutting down.
It will redirect to metacpan.org after June 25, 2018.
With hat: perl |
2.0_2 15 Sep 2017 08:58:50
![Revision:449893 Revision:449893](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
mat ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
Fix license information for portgs that use "the same license as Perl".
Sponsored by: Absolight |
2.0_2 01 Apr 2016 13:29:17
![Revision:412344 Revision:412344](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
mat ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight |
2.0_2 14 Sep 2015 12:19:50
![Revision:396892 Revision:396892](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
mat ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
Make it so that the default Perl is always called perl5.
- Move Perl's man1 files along with its man3 files.
- Move where Perl installs its modules man1 pages.
- Convert the ports installing man1 pages.
- Make different Perl versions installable at the same time.
Though you should note that only the default version can be used to
install Perl modules, and the non default Perl versions cannot use the
modules installed via ports if they contain .so as they are installed
in a version specific directory.
Reviewed by: bapt (the Mk bits)
Exp-run by: antoine
Sponsored by: Absolight
Differential Revision: https://reviews.freebsd.org/D3542 |
2.0_2 26 Nov 2014 13:08:38
![Revision:373448 Revision:373448](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
mat ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
Change the way Perl modules are installed, update the default Perl to 5.18.
Before, we had:
site_perl : lib/perl5/site_perl/5.18
site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
perl_man3 : lib/perl5/5.18/man/man3
Now we have:
site_perl : lib/perl5/site_perl
site_arch : lib/perl5/site_perl/mach/5.18
perl_man3 : lib/perl5/site_perl/man/man3
Modules without any .so will be installed at the same place regardless of the (Only the first 15 lines of the commit message are shown above ) |
2.0_1 20 Oct 2014 07:10:48
![Revision:371237 Revision:371237](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
bapt ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
Cleanup plist |
2.0_1 26 Mar 2014 14:23:09
![Revision:349256 Revision:349256](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
sunpoet ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Fix PLIST
- Bump PORTREVISION for package change
Reported by: swills |
2.0 25 Mar 2014 19:34:04
![Revision:349176 Revision:349176](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
sunpoet ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Update to 2.0
Changes: http://search.cpan.org/dist/Bio-GFF3/Changes |
1.9 23 Jan 2014 03:28:37
![Revision:340794 Revision:340794](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
sunpoet ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Update to 1.9
- Sort PLIST
Changes: http://search.cpan.org/dist/Bio-GFF3/Changes |
1.8 02 Nov 2013 19:55:32
![Revision:332533 Revision:332533](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
sunpoet ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Update to 1.8
Changes: http://search.cpan.org/dist/Bio-GFF3/Changes |
1.7 03 Oct 2013 16:19:59
![Revision:329204 Revision:329204](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
sunpoet ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Update to 1.7
- Support STAGEDIR
Changes: http://search.cpan.org/dist/Bio-GFF3/Changes |
1.6 20 Sep 2013 15:55:44
![Revision:327709 Revision:327709](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
bapt ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology) |
1.6 06 Aug 2013 13:03:54
![Revision:324315 Revision:324315](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
sunpoet ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Pet portlint: remove blank line among *_DEPENDS |
1.6 01 Aug 2013 13:15:49
![Revision:324103 Revision:324103](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
jadawin ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Update to 1.6
- Convert to new perl5 framework
- Changelog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.6/Changes |
1.5 16 Dec 2012 04:22:15
![Revision:308979 Revision:308979](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
wen ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Update to 1.5
Changes: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.5/Changes |
1.4 30 Oct 2012 01:59:37
![Revision:306654 Revision:306654](/images/subversion.png) ![files touched by this commit files touched by this commit](/images/logs.gif) |
wen ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Update to 1.4
Changes: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.4/Changes
- Trim Makefile headers
Feature safe: yes |
1.3 25 Jul 2012 06:32:08
![files touched by this commit files touched by this commit](/images/logs.gif) |
cs ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
Fix typos in COMMENT |
1.3 26 Apr 2012 10:37:09
![files touched by this commit files touched by this commit](/images/logs.gif) |
culot ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Update to 1.3
Changes: http://search.cpan.org/dist/Bio-GFF3/Changes |
1.2 16 Apr 2012 13:06:04
![files touched by this commit files touched by this commit](/images/logs.gif) |
culot ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Update to 1.2
- Add LICENSE (Artistic 1 & GPL 1)
- Add TEST_DEPENDS
Changes: http://search.cpan.org/dist/Bio-GFF3/Changes |
1.0 22 Mar 2012 11:08:28
![files touched by this commit files touched by this commit](/images/logs.gif) |
wen ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Update to 1.0
- Reset maintainer to perl@
Feature safe: yes |
0.7 10 Oct 2011 02:33:51
![files touched by this commit files touched by this commit](/images/logs.gif) |
wen ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Update to 0.7
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.7/Changes |
0.6 22 Sep 2011 07:34:49
![files touched by this commit files touched by this commit](/images/logs.gif) |
wen ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Update to 0.6
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.6/Changes |
0.5 18 Aug 2011 01:30:02
![files touched by this commit files touched by this commit](/images/logs.gif) |
swills ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Add missing BUILD_DEPENDS
PR: ports/159827
Submitted by: swills (me)
Approved by: wen (maintainer) |
0.5 10 Jun 2011 08:12:40
![files touched by this commit files touched by this commit](/images/logs.gif) |
wen ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Update to 0.5
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.5/Changes |
0.4 09 May 2011 06:32:51
![files touched by this commit files touched by this commit](/images/logs.gif) |
wen ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
- Update to 0.4
http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.4/Changes |
0.3 22 Apr 2011 08:51:25
![files touched by this commit files touched by this commit](/images/logs.gif) |
wen ![search for other commits by this committer search for other commits by this committer](/images/search.jpg) |
Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files.
All they do is convert back and forth between low-level Perl data
structures and GFF3 text.
WWW: http://search.cpan.org/dist/Bio-GFF3/ |