| Port details |
- pbseqan Pacific Biosciences patched and stripped down SeqAn
- g20171011 biology
 =0      g20171011Version of this port present on the latest quarterly branch.  DEPRECATED: Upstream merged into SeqAn project: Use biology/seqan
 This port expired on: 2024-05-05
- There is no maintainer for this port.
- Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
- Port Added: 2018-04-21 17:21:58
- Last Update: 2024-05-05 11:35:44
- Commit Hash: 2248d57
- License: BSD3CLAUSE
- WWW:
- https://github.com/PacificBiosciences/seqan
- Description:
- This is a public fork of the SeqAn Library v2.0.0, stripped down to just the
header files and with a few custom fixes.
Some of PacBio's tools depend on SeqAn for efficient implementations of some
common data-structures for sequence analysis (A huge thanks to SeqAn
development team!). However PacBio only uses a small amount of the SeqAn
code-base, and in addition requires a few minor fixes that didn't make it in to
the initial release of SeqAn v2.0.0. Thus to minimize confusion and band-width,
we will depend on this fork instead of SeqAn proper.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- pbseqan>0:biology/pbseqan
- No installation instructions:
- This port has been deleted.
- PKGNAME: pbseqan
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1550366556
SHA256 (PacificBiosciences-seqan-g20171011-21d95d737d8decb5cc3693b9065d81e831e7f57d_GH0.tar.gz) = dcdc564c877190089bd691ab4097164266e675217645613426fb1ff44029da8c
SIZE (PacificBiosciences-seqan-g20171011-21d95d737d8decb5cc3693b9065d81e831e7f57d_GH0.tar.gz) = 1527033
Packages (timestamps in pop-ups are UTC):
- This port has no dependencies.
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_pbseqan
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
g20171011
05 May 2024 11:35:44
 |
Rene Ladan (rene) |
biology/pbseqan: Remove expired port
2024-05-05 biology/pbseqan: Upstream merged into SeqAn project: Use
biology/seqan |
g20171011
04 Apr 2024 16:35:51
|
Muhammad Moinur Rahman (bofh) |
biology/pbseqan: Set EXPIRATION_DATE
- Has been marked DEPRECATED for around 5 years
- Use biology/seqan
- Set EXPIRATION_DATE 2024-05-05 |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
g20171011
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
g20171011
16 Oct 2021 09:51:39
|
Jimmy Olgeni (olgeni) |
*: fix tab vs. space issues, and comments according to the guide. |
g20171011
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
g20171011
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
g20171011
24 Nov 2019 15:53:01
  |
jwb |
biology/unanimity and dependencies: Flag as no longer open source
PacBio now provides unanimity only as a binary package through bioconda.
See https://github.com/PacificBiosciences/ccs. |
g20171011
20 Feb 2019 01:53:35
|
jwb |
biology/pbseqan: Mark deprecated
Upstream was merged into the SeqAn project represented by biology/seqan. |
g20171011
17 Feb 2019 19:31:24
|
jwb |
biology/pbseqan: Minor upgrade to latest commit
In preparation for biology/unanimity upgrade |
g20171002
21 Apr 2018 17:21:30
|
jwb |
biology/pbseqan: Pacific Biosciences patched and stripped down SeqAn
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D15152 |
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