| Port details |
- pear-merger Memory-efficient and highly accurate paired-end read merger
- 0.9.6_1 biology
 =2      0.9.6_1Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2018-04-04 17:21:55
- Last Update: 2024-01-12 15:11:29
- Commit Hash: d432922
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: CC-BY-NC-SA-3.0
- WWW:
- https://sco.h-its.org/exelixis/web/software/pear/
- Description:
- PEAR is an ultrafast, memory-efficient and highly accurate paired-end read
merger. It is fully parallelized and can run with as low as just a few
kilobytes of memory.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- pear-merger>0:biology/pear-merger
- To install the port:
- cd /usr/ports/biology/pear-merger/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/pear-merger
- pkg install pear-merger
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: pear-merger
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1519766031
SHA256 (pear_0.9.6_src_all.tar.gz) = f7728371e26a5b46fa928b0f7ae1b552ed6a78815b117ba48ef1af98e96c8e2b
SIZE (pear_0.9.6_src_all.tar.gz) = 292790
Packages (timestamps in pop-ups are UTC):
- This port has no dependencies.
- This port is required by:
- for Run
-
- biology/ddocent
Configuration Options:- No options to configure
- Options name:
- biology_pear-merger
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
0.9.6_1
12 Jan 2024 15:11:29
 |
Baptiste Daroussin (bapt) |
MANPREFIX: eliminate its usage
While here move manpages to share/man |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
0.9.6
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
0.9.6
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
0.9.6
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
0.9.6
06 Apr 2021 13:04:16
|
Piotr Kubaj (pkubaj) |
biology/pear-merger: enable on aarch64, armv6, armv7, riscv64
It should build now. |
0.9.6
06 Apr 2021 09:50:56
|
Piotr Kubaj (pkubaj) |
biology/pear-merger: fix build on non-x86
Builds fine with GCC. |
0.9.6
02 Jan 2021 01:46:09
 |
linimon |
For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
them BROKEN.
While here, pet portlint (Makevar order).
Approved by: portmgr (tier-2 blanket) |
0.9.6
21 Jun 2018 23:52:37
|
linimon |
Mark as broken on aarch64, and, where appropriate, armvX.
While here, pet portlint.
Approved by: portmgr (tier-2 blanket) |
0.9.6
04 Apr 2018 17:21:39
|
jwb |
biology/pear-merger: Memory-efficient and accurate paired-end read merger
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D14959 |
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