| Port details |
- preseq Predict yield of distinct reads from a genomic library
- 3.2.0 biology
 =0      Package not present on quarterly.This port was created during this quarter. It will be in the next quarterly branch but not the current one. - Maintainer: jwb@FreeBSD.org
- Port Added: 2024-11-22 20:39:08
- Last Update: 2024-11-24 13:50:11
- Commit Hash: 1c58b37
- License: GPLv3
- WWW:
- https://github.com/smithlabcode/preseq
- Description:
- The preseq package is aimed at predicting the yield of distinct reads
from a genomic library from an initial sequencing experiment. The
estimates can then be used to examine the utility of further
sequencing, optimize the sequencing depth, or to screen multiple
libraries to avoid low complexity samples.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/preseq/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/preseq
- pkg install preseq
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: preseq
- Flavors: there is no flavor information for this port.
- NOT_FOR_ARCHS: armv6 armv7 i386 mips powerpc powerpcspe
- distinfo:
- TIMESTAMP = 1732301093
SHA256 (preseq-3.2.0.tar.gz) = 95b81c9054e0d651de398585c7e96b807ad98f0bdc541b3e46665febbe2134d9
SIZE (preseq-3.2.0.tar.gz) = 6488708
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Library dependencies:
-
- libhts.so : biology/htslib
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_preseq
- USES:
- localbase
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 2
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
3.2.0
24 Nov 2024 13:50:11
 |
Jason W. Bacon (jwb) |
preseq: Not for 32-bit platforms
Build fails on i386 and bioinformatics generally requires 64 bits |
3.2.0
22 Nov 2024 20:35:51
|
Jason W. Bacon (jwb) |
biology/preseq: Predict yield of distinct reads from a genomic library
The preseq package is aimed at predicting the yield of distinct reads
from a genomic library from an initial sequencing experiment. The
estimates can then be used to examine the utility of further
sequencing, optimize the sequencing depth, or to screen multiple
libraries to avoid low complexity samples. |
Number of commits found: 2
|
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