| Port details |
- py-PySCeS Python Simulator for Cellular Systems
- 1.2.2 biology
 =2      1.2.1Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2021-08-17 21:33:11
- Last Update: 2024-08-03 08:27:31
- Commit Hash: 3ad1bd2
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- Also Listed In: python
- License: BSD3CLAUSE
- WWW:
- https://pysces.github.io/
- Description:
- PySCeS provides a variety of tools for the analysis of cellular systems.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}pysces>0:biology/py-PySCeS@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/biology/py-PySCeS/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-PySCeS
- pkg install py311-pysces
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py311-pysces listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py311-pysces
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1722664974
SHA256 (pysces-1.2.2.tar.gz) = 8d71e330594d63281ed88de9925776497f57c0952092d2a87df0c031cb6c8101
SIZE (pysces-1.2.2.tar.gz) = 2754765
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py311-meson-python>0 : devel/meson-python@py311
- py311-numpy>=1.16,1<1.27,1 : math/py-numpy@py311
- gfortran13 : lang/gcc13
- python3.11 : lang/python311
- as : devel/binutils
- py311-build>=0 : devel/py-build@py311
- py311-installer>=0 : devel/py-installer@py311
- Test dependencies:
-
- py311-pytest>=7,1 : devel/py-pytest@py311
- python3.11 : lang/python311
- Runtime dependencies:
-
- py311-numpy>=1.16,1<1.27,1 : math/py-numpy@py311
- py311-matplotlib>0 : math/py-matplotlib@py311
- py311-scipy>0 : science/py-scipy@py311
- py311-python-libsbml>0 : biology/py-python-libsbml@py311
- gfortran13 : lang/gcc13
- python3.11 : lang/python311
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_py-PySCeS
- USES:
- fortran localbase:ldflags python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.2.2
03 Aug 2024 08:27:31
 |
Yuri Victorovich (yuri) |
biology/py-PySCeS: update 1.2.1 → 1.2.2
Reported by: portscout |
1.2.1
26 May 2024 21:57:06
|
Yuri Victorovich (yuri) |
biology/py-PySCeS: update 1.1.1 → 1.2.1
Reported by: portscout |
1.1.1
14 Dec 2023 08:43:06
|
Yuri Victorovich (yuri) |
biology/py-PySCeS: Fix build by adding USES=localbase:ldflags
Reported by: fallout |
1.1.1
26 Jul 2023 06:20:25
|
Yuri Victorovich (yuri) |
biology/py-PySCeS: Update 1.1.0 → 1.1.1
Reported by: portscout |
1.1.0
26 Jun 2023 15:53:04
|
Yuri Victorovich (yuri) |
biology/py-PySCeS: Update 1.0.3 → 1.1.0
Reported by: portscout |
1.0.3_1
23 Apr 2023 09:09:58
|
Gerald Pfeifer (gerald) |
*: Bump PORTREVISIONs for math/mpc update to 1.3.1 |
1.0.3
11 Jan 2023 15:58:34
|
Dmitry Marakasov (amdmi3) |
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
PR: 267994
Differential revision: D37518
Approved by: bapt |
1.0.3
26 Sep 2022 08:18:31
|
Yuri Victorovich (yuri) |
biology/py-PySCeS: Update 1.0.2 -> 1.0.3
Reported by: portscout |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.0.2
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.0.2
20 May 2022 22:02:59
|
Yuri Victorovich (yuri) |
biology/py-PySCeS: Update 1.0.1 -> 1.0.2
Reported by: portscout |
1.0.1
02 Mar 2022 18:49:25
|
Thierry Thomas (thierry) |
biology/py-PySCeS: fix with Python ≠ 3.8
PR: 262304
Approved by: yuri (maintainer) |
1.0.1
25 Feb 2022 19:35:50
|
Yuri Victorovich (yuri) |
biology/py-PySCeS: Update 1.0.0 -> 1.0.1
Reported by: portscout |
1.0.0
20 Sep 2021 21:34:22
|
Yuri Victorovich (yuri) |
biology/py-PySCeS: Update 0.9.8a -> 1.0.0 |
0.9.8.a
14 Sep 2021 09:21:07
|
Yuri Victorovich (yuri) |
biology/py-PySCeS: Update 0.9.8post1 -> 0.9.8a |
0.9.8.p1
17 Aug 2021 21:30:08
|
Yuri Victorovich (yuri) |
biology/py-PySCeS: New port: Python Simulator for Cellular Systems |
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