| Port details |
- py-htseq Python library to facilitate programmatic analysis of sequence data
- 2.0.9_1 biology
 =2      2.0.9Version of this port present on the latest quarterly branch. - Maintainer: alster@vinterdalen.se
- Port Added: 2023-07-28 15:45:06
- Last Update: 2025-03-08 04:05:21
- Commit Hash: 06a08e6
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py311-PyOpenGL, p5-Sane
- Also Listed In: python
- License: GPLv3
- WWW:
- https://github.com/htseq/htseq/
- Description:
- HTSeq is a Python library to facilitate programmatic analysis of data
from high-throughput sequencing (HTS) experiments. A popular component
of HTSeq is htseq-count, a script to quantify gene expression in bulk
and single-cell RNA-Seq and similar experiments.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}HTSeq>0:biology/py-htseq@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/biology/py-htseq/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-htseq
- pkg install py311-HTSeq
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py311-HTSeq listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py311-HTSeq
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1732713260
SHA256 (htseq-2.0.9.tar.gz) = 3bbec23f033d35f40ab33a40c2b5c43f75e382c424b804c099dea635b52c2b12
SIZE (htseq-2.0.9.tar.gz) = 468908
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py311-numpy>=1.16,1<1.27,1 : math/py-numpy@py311
- py311-pysam>0 : biology/py-pysam@py311
- cython-3.11 : lang/cython@py311
- py311-setuptools>=63.1.0 : devel/py-setuptools@py311
- python3.11 : lang/python311
- Test dependencies:
-
- py311-scipy>1.5.0 : science/py-scipy@py311
- py311-pandas>=1.1.0 : math/py-pandas@py311
- py311-matplotlib>=1.4 : math/py-matplotlib@py311
- py311-pytest>=7,1 : devel/py-pytest@py311
- python3.11 : lang/python311
- Runtime dependencies:
-
- py311-numpy>=1.16,1<1.27,1 : math/py-numpy@py311
- py311-pysam>0 : biology/py-pysam@py311
- py311-matplotlib>=1.4.3 : math/py-matplotlib@py311
- python3.11 : lang/python311
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_py-htseq
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
2.0.9_1
08 Mar 2025 04:05:21
 |
Charlie Li (vishwin) |
python: bump all USE_PYTHON=distutils consumers after RUN_DEPENDS removal
Any missed ports, feel free to bump.
Any ports that need setuptools at runtime can have the devel/py-setuptools
manually added back to RUN_DEPENDS, but understand that this practice
is deprecated; see CHANGES for details. |
2.0.9
28 Nov 2024 12:22:44
|
Jason W. Bacon (jwb) |
py-htseq: New maintainer |
2.0.9
27 Nov 2024 13:46:36
|
Jason W. Bacon (jwb) |
biology/py-htseq: Update to 2.0.9
Numerous updates and fixes since 2.0.4
Changes: https://github.com/htseq/htseq/commits/main/
PR: 282940
Reported by: alster@vinterdalen.se |
2.0.4
21 Jan 2024 07:13:35
|
Wen Heping (wen) |
biology/py-htseq: Fix build with python-3.11
PR: 275494
Approved by: portmgr@(blanket, fix build) |
2.0.4
05 Aug 2023 16:40:26
|
Jason W. Bacon (jwb) |
biology/py-htseq: Update to 2.0.4
Mainly improved warnings
Changes: https://github.com/htseq/htseq
Reported by: portscout |
2.0.3
28 Jul 2023 15:41:58
|
Jason W. Bacon (jwb) |
biology/py-htseq: Python library for sequence analysis
HTSeq is a Python library to facilitate programmatic analysis of data
from high-throughput sequencing (HTS) experiments. A popular component
of HTSeq is htseq-count, a script to quantify gene expression in bulk
and single-cell RNA-Seq and similar experiments. |
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