| Port details |
- py-multiqc Aggregate bioinformatics analysis reports across samples and tools
- 1.25.2_1 biology
 =2      1.15_1Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2019-09-23 16:09:36
- Last Update: 2024-12-12 14:52:37
- Commit Hash: 1f91b7d
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- Also Listed In: python
- License: GPLv3
- WWW:
- https://github.com/MultiQC/MultiQC
- Description:
- MultiQC searches a given directory for analysis logs and compiles an HTML
report. It's a general use tool, perfect for summarising the output from
numerous bioinformatics tools.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}multiqc>0:biology/py-multiqc@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/biology/py-multiqc/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-multiqc
- pkg install py311-multiqc
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py311-multiqc listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py311-multiqc
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1732194535
SHA256 (multiqc-1.25.2.tar.gz) = 06ee04a9747e9071bfa4c4ed96df9ad5bdfdb977755b6567053d4ede7e0f387a
SIZE (multiqc-1.25.2.tar.gz) = 4326758
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py311-setuptools>=63.1.0 : devel/py-setuptools@py311
- python3.11 : lang/python311
- Test dependencies:
-
- python3.11 : lang/python311
- Runtime dependencies:
-
- py311-numpy>=1.16,1<1.27,1 : math/py-numpy@py311
- py311-humanize>0 : devel/py-humanize@py311
- py311-importlib-metadata>0 : devel/py-importlib-metadata@py311
- py311-orca>0 : devel/py-orca@py311
- py311-psutil>0 : sysutils/py-psutil@py311
- py311-packaging>0 : devel/py-packaging@py311
- py311-pydantic2>=2.7.0 : devel/py-pydantic2@py311
- py311-typeguard>0 : devel/py-typeguard@py311
- py311-tqdm>0 : misc/py-tqdm@py311
- py311-Jinja2>=3.0.0 : devel/py-Jinja2@py311
- py311-rich-click>0 : devel/py-rich-click@py311
- py311-coloredlogs>0 : devel/py-coloredlogs@py311
- py311-plotly>=5.18 : graphics/py-plotly@py311
- py311-markdown>0 : textproc/py-markdown@py311
- py311-rich>=10 : textproc/py-rich@py311
- py311-pyyaml>=4 : devel/py-pyyaml@py311
- py311-requests>0 : www/py-requests@py311
- py311-spectra>=0.0.10 : graphics/py-spectra@py311
- py311-pillow>=10 : graphics/py-pillow@py311
- py311-natsort>0 : devel/py-natsort@py311
- py311-setuptools>=63.1.0 : devel/py-setuptools@py311
- python3.11 : lang/python311
- This port is required by:
- for Run
-
- biology/atac-seq
- biology/biostar-tools
- biology/chip-seq
- biology/rna-seq
Configuration Options:- No options to configure
- Options name:
- biology_py-multiqc
- USES:
- python shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.25.2_1
12 Dec 2024 14:52:37
 |
Jason W. Bacon (jwb) |
biology/py-multiqc: Add missing py-natsort RUN_DEPEND |
1.25.2
21 Nov 2024 15:05:44
|
Jason W. Bacon (jwb) |
biology/py-multiqc: Update to 1.25.2
Numerous fixes and a few new features
Changes: https://github.com/MultiQC/MultiQC/releases
Reported by: portscout |
1.25.1
16 Nov 2024 01:28:59
|
Jason W. Bacon (jwb) |
biology/py-multiqc: Update to 1.25.1
Numerous fixes and enhancements since 1.15
(Update blocked by py-plotly)
Changes: https://github.com/MultiQC/MultiQC/releases |
1.15_1
07 Jul 2024 08:05:33
|
Po-Chuan Hsieh (sunpoet) |
devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml
- Bump PORTREVISION of dependent ports for dependency change |
1.15
05 Aug 2023 16:18:37
|
Jason W. Bacon (jwb) |
biology/py-multiqc: Update to 1.15
Major performance boost for file search
New "Librarian" module
Numerous enhancements and module updates
Changes: https://github.com/ewels/MultiQC/releases
Reported by: portscout |
1.14
27 Jun 2023 19:34:34
|
Rene Ladan (rene) |
all: remove explicit versions in USES=python for "3.x+"
The logic in USES=python will automatically convert this to 3.8+ by
itself.
Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.
finance/quickfix: mark BROKEN with PYTHON
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
^~~~~~~~~~
1 warning and 1 error generated.
Reviewed by: portmgr, vishwin, yuri
Differential Revision: <https://reviews.freebsd.org/D40568> |
1.14
12 May 2023 12:55:38
|
Jason W. Bacon (jwb) |
biology/py-multiqc: Update to 1.14
Numerous new features, enhancements and bug fixes
Changes: https://github.com/ewels/MultiQC/releases |
1.10_1
23 Apr 2023 09:09:58
|
Gerald Pfeifer (gerald) |
*: Bump PORTREVISIONs for math/mpc update to 1.3.1 |
1.10
11 Jan 2023 15:58:34
|
Dmitry Marakasov (amdmi3) |
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
PR: 267994
Differential revision: D37518
Approved by: bapt |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.10
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.10
10 May 2021 20:13:20
|
Thierry Thomas (thierry) |
math/py-matplotlib: chase minimum Python version in dependent ports
Since the previous update changed USES=python from 3.6+ to 3.7+, all
dependent ports must have USES=python:3.7+ as well, otherwise it breaks
the @py36 flavor.
PR: 255347
Reported by: sunpoet |
1.10
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
1.10
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.10
20 Mar 2021 14:25:48
 |
jwb |
biology/py-multiqc: Update to 1.10
Numerous new features, a few bug fixes since 1.9
Reported by: portscout |
1.9
05 Feb 2021 01:37:04
|
jwb |
biology/py-multiqc: Update to 1.9
Fix runtime error due to incompatibility of 1.8 with latest matplotlib
Drop python2 support
Numerous new features and bug fixes |
1.8
19 Sep 2020 14:15:43
|
antoine |
Unbreak bulk -a |
1.8
26 Nov 2019 16:25:09
|
jwb |
biology/py-multiqc: Upgrade to 1.8
Major enhancements including 6 new modules and improvements to existing modules
Numerous minor fixes and enhancements
Reported by: portscout |
1.7
23 Sep 2019 16:09:30
|
jwb |
biology/py-multiqc: Aggregate bioinformatics analysis reports
MultiQC searches a given directory for analysis logs and compiles an HTML
report. It's a general use tool, perfect for summarising the output from
numerous bioinformatics tools. |
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