| Port details |
- py-pybigwig Python access to bigWig files using libBigWig
- 0.3.22_1 biology
 =2      0.3.22Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2021-10-13 13:09:05
- Last Update: 2025-03-08 04:05:21
- Commit Hash: 06a08e6
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py311-PyOpenGL, p5-Sane
- Also Listed In: python
- License: MIT
- WWW:
- https://github.com/deeptools/pyBigWig/
- Description:
- A python extension, written in C, for quick access to bigBed files and access
to and creation of bigWig files. This extension uses libBigWig for local and
remote file access.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}pyBigWig>0:biology/py-pybigwig@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/biology/py-pybigwig/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-pybigwig
- pkg install py311-pyBigWig
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py311-pyBigWig listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py311-pyBigWig
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1681053575
SHA256 (pyBigWig-0.3.22.tar.gz) = 5d4426f754bd7b7f6dc21d6c3f93b58a96a65b6eb2e578ae03b31a71272d2243
SIZE (pyBigWig-0.3.22.tar.gz) = 73864
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py311-setuptools>=63.1.0 : devel/py-setuptools@py311
- python3.11 : lang/python311
- Test dependencies:
-
- python3.11 : lang/python311
- Runtime dependencies:
-
- python3.11 : lang/python311
- Library dependencies:
-
- libcurl.so : ftp/curl
- This port is required by:
- for Run
-
- biology/py-crossmap
- biology/py-deeptools
Configuration Options:- No options to configure
- Options name:
- biology_py-pybigwig
- USES:
- localbase python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
0.3.22_1
08 Mar 2025 04:05:21
 |
Charlie Li (vishwin) |
python: bump all USE_PYTHON=distutils consumers after RUN_DEPENDS removal
Any missed ports, feel free to bump.
Any ports that need setuptools at runtime can have the devel/py-setuptools
manually added back to RUN_DEPENDS, but understand that this practice
is deprecated; see CHANGES for details. |
0.3.22
21 Feb 2025 13:04:08
|
Jason W. Bacon (jwb) |
Multiple biology ports: Replace pypi homepage with github
portscout apparently can't work with PYPI homepages |
0.3.22
16 Dec 2023 13:59:37
|
Jason W. Bacon (jwb) |
biology/py-pybigwig: Update to 0.3.22
No real changes from 0.3.21
Add patch to resolve conflict with roundup() macro in sys/param.h
Reported by: pkg-fallout |
0.3.21
01 Apr 2023 21:10:15
|
Jason W. Bacon (jwb) |
biology/py-pybigwig: Update to 0.3.21
No relevant changes, just an upstream wheel fix.
Reported by: portscout |
0.3.20
08 Mar 2023 13:50:30
|
Jason W. Bacon (jwb) |
biology/py-pybigwig: Update to 0.3.20
Build system fixes
Reported by: portscout |
0.3.18
11 Jan 2023 15:58:34
|
Dmitry Marakasov (amdmi3) |
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
PR: 267994
Differential revision: D37518
Approved by: bapt |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
0.3.18
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
0.3.18
13 Oct 2021 21:21:32
|
Jason W. Bacon (jwb) |
biology/py-bigwig: Rename to biology/py-pybigwig
Fully match upstream name |
0.3.18_1
13 Oct 2021 18:57:58
|
Antoine Brodin (antoine) |
biology/py-pybigwig: remove, duplicate of biology/py-bigwig |
0.3.18_1
13 Oct 2021 16:02:12
|
Jason W. Bacon (jwb) |
biology/py-py-pybigwig: Patch out setup.py warning
Neglected to add this file during previous commit |
0.3.18_1
13 Oct 2021 16:02:12
|
Jason W. Bacon (jwb) |
biology/py-pybigwig: Fix poudriere build
Typo in post-install |
0.3.18
13 Oct 2021 13:03:21
|
Jason W. Bacon (jwb) |
biology/py-pybigwig: Python access to bigWig files using libBigWig
py-bigwig is a python extension, written in C, for quick access to
bigBed files and access to and creation of bigWig files. This extension
uses libBigWig for local and remote file access. |
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