| Port details |
- py-valerius Python bioinformatics tools
- 0.2_1 biology
 =2      0.2Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2022-10-04 04:09:26
- Last Update: 2025-03-08 04:05:21
- Commit Hash: 06a08e6
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py311-PyOpenGL, p5-Sane
- Also Listed In: python
- License: MIT
- WWW:
- https://github.com/samirelanduk/valerius
- Description:
- valerius is a simple Bioinformatics toolset for processing Biological sequences.
It can gfetch sequences from servers, detect their types, do FASTA parsing.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}valerius>0:biology/py-valerius@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/biology/py-valerius/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-valerius
- pkg install py311-valerius
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py311-valerius listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py311-valerius
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1664855237
SHA256 (samirelanduk-valerius-v0.2_GH0.tar.gz) = f4b206cd4e9ec56630f4f55a7064f7fbea302a8a6620cac832475c2260b917ab
SIZE (samirelanduk-valerius-v0.2_GH0.tar.gz) = 18486
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py311-setuptools>=63.1.0 : devel/py-setuptools@py311
- python3.11 : lang/python311
- Test dependencies:
-
- python3.11 : lang/python311
- Runtime dependencies:
-
- py311-requests>0 : www/py-requests@py311
- python3.11 : lang/python311
- This port is required by:
- for Build
-
- science/py-atomium
- for Run
-
- science/py-atomium
Configuration Options:- No options to configure
- Options name:
- biology_py-valerius
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 2
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
0.2_1
08 Mar 2025 04:05:21
 |
Charlie Li (vishwin) |
python: bump all USE_PYTHON=distutils consumers after RUN_DEPENDS removal
Any missed ports, feel free to bump.
Any ports that need setuptools at runtime can have the devel/py-setuptools
manually added back to RUN_DEPENDS, but understand that this practice
is deprecated; see CHANGES for details. |
0.2
04 Oct 2022 04:06:22
|
Yuri Victorovich (yuri) |
biology/py-valerius: New port: Python bioinformatics tools |
Number of commits found: 2
|
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