| Port details |
- rubygem-bio Integrated environment for Bioinformatics written in Ruby
- 2.0.5 biology
 =2      2.0.5Version of this port present on the latest quarterly branch. - Maintainer: ruby@FreeBSD.org
- Port Added: 2017-02-05 04:27:03
- Last Update: 2023-09-30 00:46:30
- Commit Hash: df6a298
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- Also Listed In: rubygems
- License: BSD2CLAUSE RUBY
- WWW:
- http://bioruby.org/
- Description:
- BioRuby project aims to implement integrated environment for
Bioinformatics by using Ruby.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- rubygem-bio>0:biology/rubygem-bio
- To install the port:
- cd /usr/ports/biology/rubygem-bio/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/rubygem-bio
- pkg install rubygem-bio
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: rubygem-bio
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1696002174
SHA256 (rubygem/bio-2.0.5.gem) = 36001f30e792ba3e8b0b9ad4ed15941ac5b12a16835c02dc99f3ab34c7455a6b
SIZE (rubygem/bio-2.0.5.gem) = 1378816
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- ruby31 : lang/ruby31
- gem : devel/ruby-gems
- Runtime dependencies:
-
- ruby31 : lang/ruby31
- gem : devel/ruby-gems
- Patch dependencies:
-
- ruby31 : lang/ruby31
- gem : devel/ruby-gems
-
- This port is required by:
- for Run
-
- biology/rubygem-bio-executables
- biology/rubygem-bio-old-biofetch-emulator
- biology/rubygem-bio-shell
Configuration Options:- No options to configure
- Options name:
- biology_rubygem-bio
- USES:
- gem
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
2.0.5
30 Sep 2023 00:46:30
 |
Po-Chuan Hsieh (sunpoet) |
biology/rubygem-bio: Update to 2.0.5
Changes: https://github.com/bioruby/bioruby/blob/master/RELEASE_NOTES.rdoc |
2.0.4
14 Jan 2023 23:08:33
|
Muhammad Moinur Rahman (bofh) |
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
Switch from Mk/bsd.ruby.mk to Mk/Uses/ruby.mk
Notable changes are.
- Mk/bsd.ruby.mk is moved to Mk/Uses/ruby.mk.
- USE_RUBY=yes is replaced with USES=ruby.
- USE_RUBY_EXTCONF is replaced with USES=ruby:extconf.
- USE_RUBY_RDOC is replaced with USES=ruby:rdoc.
- USE_RUBY_SETUP is replaces with USES=ruby:setup.
- RUBY_NO_BUILD_DEPENDS and RUBY_NO_RUN_DEPENDS are replaced with
USES=ruby:{build,none,run}.
- RUBY_REQUIRE isn't used anywhere, so removed.
- USES=gem now implies USES=ruby.
This is mainly the work of yasu@ at https://reviews.freebsd.org/D27863
I have just made some cosmetic changes and ran exp-run to test that the
tree is not in a BROKEN state.
Approved by: portmgr
Differential Revision: https://reviews.freebsd.org/D37925 |
2.0.4
03 Oct 2022 02:17:49
|
Po-Chuan Hsieh (sunpoet) |
biology/rubygem-bio: Update to 2.0.4
Changes: https://github.com/bioruby/bioruby/blob/master/RELEASE_NOTES.rdoc |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
2.0.3
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
2.0.3
20 Jul 2022 14:20:57
|
Tobias C. Berner (tcberner) |
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above ) |
2.0.3
11 Jan 2022 18:47:28
|
Po-Chuan Hsieh (sunpoet) |
biology/rubygem-bio: Update to 2.0.3
Changes: https://github.com/bioruby/bioruby/blob/master/RELEASE_NOTES.rdoc |
2.0.2
30 Jun 2021 20:44:06
|
Po-Chuan Hsieh (sunpoet) |
biology/rubygem-bio: Update to 2.0.2
Changes: https://github.com/bioruby/bioruby/blob/master/RELEASE_NOTES.rdoc |
2.0.1
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
2.0.1
24 Jul 2020 07:49:43
 |
sunpoet |
Update to 2.0.1
Changes: https://github.com/bioruby/bioruby/blob/master/RELEASE_NOTES.rdoc |
1.5.2
21 Sep 2018 18:08:24
|
sunpoet |
Update to 1.5.2
Changes: https://github.com/bioruby/bioruby/blob/bioruby-1.5/RELEASE_NOTES.rdoc |
1.5.1
06 Feb 2017 23:03:17
|
sunpoet |
Update to 1.5.1
- Update LICENSE
- Add LICENSE_FILE
Changes: https://github.com/bioruby/bioruby/blob/bioruby-1.5/RELEASE_NOTES.rdoc
https://github.com/bioruby/bioruby/blob/master/doc/RELEASE_NOTES-1.5.0.rdoc |
1.4.3.0001_1
05 Feb 2017 04:26:56
|
sunpoet |
Move devel/rubygem-bio to biology/rubygem-bio |
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