| Port details |
- sam2pairwise Show pairwise alignment for each read in a SAM file
- 1.0.0 biology
 =2      1.0.0Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2021-09-07 20:36:08
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: MIT
- WWW:
- https://github.com/mlafave/sam2pairwise
- Description:
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to
reconstruct the pairwise alignment of each read.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- sam2pairwise>0:biology/sam2pairwise
- To install the port:
- cd /usr/ports/biology/sam2pairwise/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/sam2pairwise
- pkg install sam2pairwise
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: sam2pairwise
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1631041315
SHA256 (mlafave-sam2pairwise-v1.0.0_GH0.tar.gz) = 899d3db071cc248870bbedbdb39784de4c54c9a7888bc408022e809ace47ec0e
SIZE (mlafave-sam2pairwise-v1.0.0_GH0.tar.gz) = 10013
Packages (timestamps in pop-ups are UTC):
- This port has no dependencies.
- This port is required by:
- for Run
-
- biology/biostar-tools
Configuration Options:- No options to configure
- Options name:
- biology_sam2pairwise
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 3
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
07 Sep 2022 21:58:51
 |
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.0.0
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.0.0
07 Sep 2021 20:32:29
|
Jason W. Bacon (jwb) |
biology/sam2pairwise: Show pairwise alignment for each read in a SAM file
sam2pairwise takes a SAM file and uses the CIGAR and MD tag to
reconstruct the pairwise alignment of each read. |
Number of commits found: 3
|
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