| Port details |
- seqtk Tool for processing sequences in FASTA/FASTQ format
- 1.4 biology
 =2      1.4Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2018-04-03 20:57:19
- Last Update: 2023-05-23 22:42:13
- Commit Hash: de28a1d
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: GPLv2
- WWW:
- https://github.com/lh3/seqtk
- Description:
- Seqtk is a fast and lightweight tool for processing sequences in the FASTA or
FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be
optionally compressed by gzip. It performs basic file conversions and edits
much like standard Unix tools do with text files.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/seqtk/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/seqtk
- pkg install seqtk
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: seqtk
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1684848703
SHA256 (lh3-seqtk-v1.4_GH0.tar.gz) = d124604ec24f29ed14ce127426ab90e0f3a2c0280c80d1a3ff8b1c09feede19c
SIZE (lh3-seqtk-v1.4_GH0.tar.gz) = 23748
Packages (timestamps in pop-ups are UTC):
- This port has no dependencies.
- This port is required by:
- for Run
-
- biology/biostar-tools
- biology/ddocent
Configuration Options:- No options to configure
- Options name:
- biology_seqtk
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Number of commits found: 7
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.4
23 May 2023 22:42:13
 |
Jason W. Bacon (jwb) |
biology/seqtk: Update to 1.4
Several new subcommands
Faster FASTX parsing
Reported by: portscout |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.3
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.3
18 Dec 2021 19:37:06
|
Jason W. Bacon (jwb) |
biology/seqtk: Update to 1.3
A few minor fixes and enhancements
Changes: https://github.com/lh3/seqtk/tags |
1.2.8
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
1.2.8
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.2.8
03 Apr 2018 20:57:05
 |
jwb |
biology/seqtk: Tool for processing sequences in FASTA/FASTQ format
Approved by: jrm
Differential Revision: https://reviews.freebsd.org/D14954 |
Number of commits found: 7
|
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