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Port details
taxonkit Practical and efficient NCBI taxonomy toolkit
0.16.0_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.15.1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-05-26 22:27:16
Last Update: 2024-03-24 14:29:00
Commit Hash: a5a000d
License: MIT
WWW:
https://bioinf.shenwei.me/taxonkit/
Description:
TaxonKit allows to: * list taxonomic subtrees (TaxIds) * query taxonomic lineage of given TaxIds * reformat lineage in canonical ranks * convert scientific names to TaxIds * filter TaxIds by taxonomic rank range * compute lowest common ancestor (LCA) for TaxIds * create TaxId changelog from dump archives
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
Collapse this list.
  1. bin/taxonkit
  2. /usr/local/share/licenses/taxonkit-0.16.0_1/catalog.mk
  3. /usr/local/share/licenses/taxonkit-0.16.0_1/LICENSE
  4. /usr/local/share/licenses/taxonkit-0.16.0_1/MIT
Collapse this list.
Dependency lines:
  • taxonkit>0:biology/taxonkit
To install the port:
cd /usr/ports/biology/taxonkit/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/taxonkit
  • pkg install taxonkit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: taxonkit
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1709932817 SHA256 (go/biology_taxonkit/taxonkit-v0.16.0/v0.16.0.mod) = 958cf5808c5e89475095dbcfd5796c9c4d44401abf325dd9e7f1a4bdb81d01b0 SIZE (go/biology_taxonkit/taxonkit-v0.16.0/v0.16.0.mod) = 1069

Expand this list (2 items)

Collapse this list.

SHA256 (go/biology_taxonkit/taxonkit-v0.16.0/v0.16.0.zip) = 4e2283ae0decbcecf26abc8c3fef80e8a9dfc53934095f493b321d6e1ff4130a SIZE (go/biology_taxonkit/taxonkit-v0.16.0/v0.16.0.zip) = 1604675

Collapse this list.


Packages (timestamps in pop-ups are UTC):
taxonkit
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.16.00.16.0-0.16.00.16.0---
FreeBSD:13:quarterly0.15.10.15.1-0.15.10.15.1---
FreeBSD:14:latest0.16.00.16.0-0.16.00.16.0---
FreeBSD:14:quarterly0.15.10.15.1-0.15.10.15.1---
FreeBSD:15:latest0.16.00.16.0n/a0.15.1_1n/a---
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. go121 : lang/go121
Fetch dependencies:
  1. go121 : lang/go121
  2. ca_root_nss>0 : security/ca_root_nss
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
biology_taxonkit
USES:
go:modules zip
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://proxy.golang.org/github.com/shenwei356/taxonkit/@v/
Collapse this list.

Number of commits found: 32

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.16.0_1
24 Mar 2024 14:29:00
commit hash: a5a000df3b3697665460dbfbafe7120e306d8913commit hash: a5a000df3b3697665460dbfbafe7120e306d8913commit hash: a5a000df3b3697665460dbfbafe7120e306d8913commit hash: a5a000df3b3697665460dbfbafe7120e306d8913 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
lang/go: Change DEFAULT to 1.21

PR:		277776
Approved by:	portmgr (exp-run)
0.16.0
08 Mar 2024 22:34:42
commit hash: ad0091716c45ed8905d5e10007db87c55f65f039commit hash: ad0091716c45ed8905d5e10007db87c55f65f039commit hash: ad0091716c45ed8905d5e10007db87c55f65f039commit hash: ad0091716c45ed8905d5e10007db87c55f65f039 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/taxonkit: update 0.15.1 → 0.16.0

Reported by:	portscout
0.15.1_1
11 Feb 2024 10:39:17
commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291 files touched by this commit
Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump PORTREVISION after lang/go* update

PR:		276530
0.15.1
20 Dec 2023 07:02:18
commit hash: 4d0e67e147b5e18eed52c9b23352c7bb9fddc397commit hash: 4d0e67e147b5e18eed52c9b23352c7bb9fddc397commit hash: 4d0e67e147b5e18eed52c9b23352c7bb9fddc397commit hash: 4d0e67e147b5e18eed52c9b23352c7bb9fddc397 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/taxonkit: update 0.15.0 → 0.15.1

Reported by:	portscout
0.15.0_2
07 Dec 2023 02:22:10
commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609 files touched by this commit
Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump PORTREVISION after lang/go* update

PR:		274405
0.15.0_1
08 Sep 2023 14:34:56
commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go* update
0.15.0
22 Aug 2023 19:20:56
commit hash: 8b368b8263fd3e87197b7d90904dcfb8036be2b6commit hash: 8b368b8263fd3e87197b7d90904dcfb8036be2b6commit hash: 8b368b8263fd3e87197b7d90904dcfb8036be2b6commit hash: 8b368b8263fd3e87197b7d90904dcfb8036be2b6 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/taxonkit: Update 0.14.2 → 0.15.0

Reported by:	portscout
0.14.2_1
04 Aug 2023 14:24:50
commit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fccommit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fccommit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fccommit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fc files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{119,120} update
0.14.2
15 Apr 2023 05:02:19
commit hash: 9720168c6069412d6243aeeb208546e44bf4f189commit hash: 9720168c6069412d6243aeeb208546e44bf4f189commit hash: 9720168c6069412d6243aeeb208546e44bf4f189commit hash: 9720168c6069412d6243aeeb208546e44bf4f189 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/taxonkit: Update 0.14.1 → 0.14.2

Reported by:	portscout
0.14.1_5
08 Apr 2023 15:13:25
commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{119,120} update
0.14.1_4
09 Mar 2023 19:18:07
commit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93dcommit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93dcommit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93dcommit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93d files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after Go ports update
0.14.1_3
15 Feb 2023 19:06:01
commit hash: 56b5ec772f679a600dabe41622c1350594628286commit hash: 56b5ec772f679a600dabe41622c1350594628286commit hash: 56b5ec772f679a600dabe41622c1350594628286commit hash: 56b5ec772f679a600dabe41622c1350594628286 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{119,120} update
0.14.1_2
09 Feb 2023 21:55:23
commit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0dcommit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0dcommit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0dcommit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0d files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after GO_DEFAULT update.
0.14.1_1
14 Jan 2023 11:31:17
commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTVERSION after lang/go{118,119} update
0.14.1
27 Dec 2022 07:50:58
commit hash: f9b96043592c34934f8dd4c4ca1135dc705693e7commit hash: f9b96043592c34934f8dd4c4ca1135dc705693e7commit hash: f9b96043592c34934f8dd4c4ca1135dc705693e7commit hash: f9b96043592c34934f8dd4c4ca1135dc705693e7 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/taxonkit: Update 0.14.0 -> 0.14.1

Reported by:	portscout
0.14.0_1
11 Dec 2022 11:17:27
commit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2acommit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2acommit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2acommit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2a files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{118,119} update
0.14.0
29 Nov 2022 09:18:47
commit hash: a0509cef4d1106ce391b3d9c2571a8bf3c2c77becommit hash: a0509cef4d1106ce391b3d9c2571a8bf3c2c77becommit hash: a0509cef4d1106ce391b3d9c2571a8bf3c2c77becommit hash: a0509cef4d1106ce391b3d9c2571a8bf3c2c77be files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/taxonkit: Update 0.13.0 -> 0.14.0

Reported by:	portscout
0.13.0_1
06 Oct 2022 19:24:26
commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{118,119} update
0.13.0
25 Sep 2022 02:45:15
commit hash: 0eb3b0314be2b781387fd46877196536e73be423commit hash: 0eb3b0314be2b781387fd46877196536e73be423commit hash: 0eb3b0314be2b781387fd46877196536e73be423commit hash: 0eb3b0314be2b781387fd46877196536e73be423 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/taxonkit: Update 0.12.0 -> 0.13.0

Reported by:	portscout
0.12.0_3
08 Sep 2022 16:33:18
commit hash: f05c98fffb232735c05ba30d43fb279085b813d7commit hash: f05c98fffb232735c05ba30d43fb279085b813d7commit hash: f05c98fffb232735c05ba30d43fb279085b813d7commit hash: f05c98fffb232735c05ba30d43fb279085b813d7 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{118,119} update
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
0.12.0_2
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.12.0_2
03 Aug 2022 21:35:13
commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after Go update

Bump Go ports PORTREVISION after GO_DEFAULT and lang/go118 update.
0.12.0_1
14 Jul 2022 12:46:05
commit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5acommit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5acommit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5acommit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5a files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{117,118} update
0.12.0
09 Jun 2022 06:08:00
commit hash: 2ddde7b75aea9415d356c63c0587f8bb76c744a9commit hash: 2ddde7b75aea9415d356c63c0587f8bb76c744a9commit hash: 2ddde7b75aea9415d356c63c0587f8bb76c744a9commit hash: 2ddde7b75aea9415d356c63c0587f8bb76c744a9 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/taxonkit: Update 0.11.1 -> 0.12.0

Reported by:	portscout
0.11.1_1
07 Jun 2022 21:56:10
commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35 files touched by this commit
Dmitri Goutnik (dmgk) search for other commits by this committer
*/*: Bump port revisons after lang/go{117,118} update
0.11.1
20 May 2022 22:02:59
commit hash: 5ba960dcdd54b5f62a38294488960098b667497ecommit hash: 5ba960dcdd54b5f62a38294488960098b667497ecommit hash: 5ba960dcdd54b5f62a38294488960098b667497ecommit hash: 5ba960dcdd54b5f62a38294488960098b667497e files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/taxonkit: Update 0.11.0 -> 0.11.1

Reported by:	portscout
0.11.0
16 May 2022 18:45:25
commit hash: 8732b987ed78ccc5da4ce9c194095c2ca238277acommit hash: 8732b987ed78ccc5da4ce9c194095c2ca238277acommit hash: 8732b987ed78ccc5da4ce9c194095c2ca238277acommit hash: 8732b987ed78ccc5da4ce9c194095c2ca238277a files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/taxonkit: Update 0.10.1 -> 0.11.0

Reported by:	portscout
0.10.1_1
30 Mar 2022 07:01:44
commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653 files touched by this commit
Guangyuan Yang (ygy) search for other commits by this committer
*/*: Bump PORTREVISION after lang/go 1.18 update
0.10.1
27 Feb 2022 18:35:41
commit hash: 40c0dcf2708ea712b76513fc5c3a51fa572cb25dcommit hash: 40c0dcf2708ea712b76513fc5c3a51fa572cb25dcommit hash: 40c0dcf2708ea712b76513fc5c3a51fa572cb25dcommit hash: 40c0dcf2708ea712b76513fc5c3a51fa572cb25d files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/taxonkit: Update 0.9.0 -> 0.10.1

Reported by:	portscout
0.9.0
02 Dec 2021 20:57:06
commit hash: 9e2410c61219843b366be45432092ab26c02cac4commit hash: 9e2410c61219843b366be45432092ab26c02cac4commit hash: 9e2410c61219843b366be45432092ab26c02cac4commit hash: 9e2410c61219843b366be45432092ab26c02cac4 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/taxonkit: Update 0.8.0 -> 0.9.0

Reported by:	portscout
0.8.0
26 May 2021 22:25:22
commit hash: 5b018ca96217b47530cb3e48dd6f869be279ebaacommit hash: 5b018ca96217b47530cb3e48dd6f869be279ebaacommit hash: 5b018ca96217b47530cb3e48dd6f869be279ebaacommit hash: 5b018ca96217b47530cb3e48dd6f869be279ebaa files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/taxonkit: New port: Practical and efficient NCBI taxonomy toolkit

Number of commits found: 32