notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)Want a good monitor light? See my photosAll times are UTC		 Ukraine
Port details on branch 2023Q2
taxonkit Practical and efficient NCBI taxonomy toolkit
0.14.1_5 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.14.1_5Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2023-04-08 16:02:42
Last Update: 2023-04-08 15:33:05
Commit Hash: 95d3a8d
License: MIT
WWW:
https://bioinf.shenwei.me/taxonkit/
Description:
TaxonKit allows to: * list taxonomic subtrees (TaxIds) * query taxonomic lineage of given TaxIds * reformat lineage in canonical ranks * convert scientific names to TaxIds * filter TaxIds by taxonomic rank range * compute lowest common ancestor (LCA) for TaxIds * create TaxId changelog from dump archives
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
Collapse this list.
  1. bin/taxonkit
  2. /usr/local/share/licenses/taxonkit-0.14.1_5/catalog.mk
  3. /usr/local/share/licenses/taxonkit-0.14.1_5/LICENSE
  4. /usr/local/share/licenses/taxonkit-0.14.1_5/MIT
Collapse this list.
Dependency lines:
  • taxonkit>0:biology/taxonkit
To install the port:
cd /usr/ports/biology/taxonkit/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/taxonkit
  • pkg install taxonkit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: taxonkit
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1672122101 SHA256 (go/biology_taxonkit/taxonkit-v0.14.1/v0.14.1.mod) = 091834993521d197914c2f19ce12591eb6bb0369262ad83f49fd91043200f7fb SIZE (go/biology_taxonkit/taxonkit-v0.14.1/v0.14.1.mod) = 1051

Expand this list (2 items)

Collapse this list.

SHA256 (go/biology_taxonkit/taxonkit-v0.14.1/v0.14.1.zip) = ceaa40ee2684b86e8fcefaef9bee4c6e5f45c6f63d11cfa20f8d28b43df0e1be SIZE (go/biology_taxonkit/taxonkit-v0.14.1/v0.14.1.zip) = 1600177

Collapse this list.

Packages (timestamps in pop-ups are UTC):
taxonkit
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.19.0_10.19.0_1-0.19.00.19.0_1---
FreeBSD:13:quarterly0.19.00.19.0-0.19.00.19.0---
FreeBSD:14:latest0.19.00.19.0_1-0.19.00.19.0_1---
FreeBSD:14:quarterly0.18.00.19.0-0.18.00.19.0---
FreeBSD:15:latest0.19.00.19.0n/a0.19.0n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. go120 : lang/go120
Fetch dependencies:
  1. go120 : lang/go120
  2. ca_root_nss>0 : security/ca_root_nss
There are no ports dependent upon this port
Configuration Options:
No options to configure
Options name:
biology_taxonkit
USES:
go:modules zip
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://proxy.golang.org/github.com/shenwei356/taxonkit/@v/
Collapse this list.

Number of commits found: 1

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.14.1_5
08 Apr 2023 15:33:05
commit hash: 95d3a8db15d8962f7839ab8406862a29f117d250commit hash: 95d3a8db15d8962f7839ab8406862a29f117d250commit hash: 95d3a8db15d8962f7839ab8406862a29f117d250commit hash: 95d3a8db15d8962f7839ab8406862a29f117d250 files touched by this commit		 Dmitri Goutnik (dmgk) search for other commits by this committer 
all: Bump PORTREVISION after lang/go{119,120} update

Approved by: ports-secteam (blanket)

Number of commits found: 1
Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
Security Policy
Privacy
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
gitlabApr 24
redisApr 24
redis62Apr 24
redis72Apr 24
valkeyApr 24
chromiumApr 23
ungoogled-chromiumApr 23
navidromeApr 22
erlangApr 20
erlang-runtime21Apr 20
erlang-runtime22Apr 20
erlang-runtime23Apr 20
erlang-runtime24Apr 20
erlang-runtime25Apr 20
erlang-runtime26Apr 20

14 vulnerabilities affecting 332 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last processed:
2025-04-25 06:28:01 UTC


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)

Calculated hourly:
Port count 33283
Broken 124
Deprecated 367
Ignore 241
Forbidden 1
Restricted 2
No CDROM 1
Vulnerable 36
Expired 33
Set to expire 311
Interactive 0
new 24 hours 2
new 48 hours5
new 7 days21
new fortnight39
new month84
Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD 		Valid HTML, CSS, and RSS. Copyright © 2000-2025 Dan Langille. All rights reserved.