| Port details |
- unanimity Pacific Biosciences consensus library and applications
- 3.4.1_4 biology
 =0      3.4.1_4Version of this port present on the latest quarterly branch.  BROKEN: unfetchable
 DEPRECATED: Unmaintained, uses EOLed python27
 This port expired on: 2020-01-27
 IGNORE: is marked as broken: unfetchable
- There is no maintainer for this port.
- Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
- Port Added: 2018-04-24 14:17:02
- Last Update: 2020-01-27 15:34:18
- SVN Revision: 524263
- License: BSD3CLAUSE
- WWW:
- https://github.com/PacificBiosciences/unanimity
- Description:
- Unanimity is a C++ library + applications to generate and process accurate
consensus sequences from Pacific Biosciences sequence data.
The core binary, CCS (circular consensus calling) takes multiple reads of the
same SMRTbell sequence and combines them, employing a statistical model, to
produce one high quality consensus sequence.
WWW: https://github.com/PacificBiosciences/unanimity
 cgit ¦ GitHub ¦ GitHub ¦ GitLab ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- unanimity>0:biology/unanimity
- No installation instructions:
- This port has been deleted.
- PKGNAME: unanimity
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1551014614
SHA256 (PacificBiosciences-unanimity-v3.4.1_GH0.tar.gz) = fccb2cf14cdc324592724df5699a113a04ce6d4f40f00c68ca3df541e17b4f35
SIZE (PacificBiosciences-unanimity-v3.4.1_GH0.tar.gz) = 6493661
No package information for this port in our database- Sometimes this happens. Not all ports have packages. Perhaps there is a build error. Check the fallout link:
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- seqan>=2.4.0 : biology/seqan
- swig30>=3.0 : devel/swig30
- py27-numpy>0 : math/py-numpy@py27
- meson : devel/meson
- ninja : devel/ninja
- pkgconf>=1.3.0_1 : devel/pkgconf
- python2.7 : lang/python27
- Runtime dependencies:
-
- py27-numpy>0 : math/py-numpy@py27
- python2.7 : lang/python27
- Library dependencies:
-
- libhts.so : biology/htslib
- libboost_regex.so : devel/boost-libs
- libpbbam.so.0.18.0 : biology/pbbam
- libpbcopper.so.0.4.1 : biology/pbcopper
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- N/A
- USES:
- compiler:c++14-lang localbase meson pkgconfig python:2.7
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
3.4.1_4
27 Jan 2020 15:34:18
  |
rene |
Remove expired ports:
2020-01-27 accessibility/py-papi: Unmaintained, uses EOLed python27
2020-01-27 archivers/py-czipfile: Unmaintained, uses EOLed python27
2020-01-27 audio/boodler: Unmaintained, uses EOLed python27
2020-01-27 audio/dir2ogg: Unmaintained, uses EOLed python27
2020-01-27 audio/jokosher: Unmaintained, uses EOLed python27
2020-01-27 audio/mpdbrowser: Unmaintained, uses EOLed python27
2020-01-27 audio/nekobee: Unmaintained, uses EOLed python27
2020-01-27 audio/patchage: Unmaintained, uses EOLed python27
2020-01-27 audio/py-ao: Unmaintained, uses EOLed python27
2020-01-27 audio/py-id3: Unmaintained, uses EOLed python27
2020-01-27 audio/py-shout: Unmaintained, uses EOLed python27
2020-01-27 audio/py-speex: Unmaintained, uses EOLed python27
2020-01-27 audio/pytone: Unmaintained, uses EOLed python27 (Only the first 15 lines of the commit message are shown above  ) |
3.4.1_4
05 Jan 2020 10:26:04
|
antoine |
Mark a few ports broken (unfetchable) |
3.4.1_4
26 Dec 2019 07:54:29
|
antoine |
Deprecate a few ports
With hat: portmgr |
3.4.1_4
11 Dec 2019 17:53:49
|
jbeich |
devel/boost-*: update to 1.72.0
Changes: http://www.boost.org/users/history/version_1_72_0.html
PR: 241449
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D22136 |
3.4.1_3
28 Nov 2019 05:46:05
|
jwb |
biology/unanimity: Remove erroneous BROKEN
Unsure why this was marked unfetchable. Fetch works fine and the port is
still useful, though it cannot be upgraded to newer releases, which are
closed-source. |
3.4.1_3
24 Nov 2019 15:53:01
|
jwb |
biology/unanimity and dependencies: Flag as no longer open source
PacBio now provides unanimity only as a binary package through bioconda.
See https://github.com/PacificBiosciences/ccs. |
3.4.1_3
06 Nov 2019 12:48:32
 |
antoine |
Mark a few ports BROKEN, unfetchable |
3.4.1_3
19 Aug 2019 15:35:28
|
jbeich |
devel/boost-*: update to 1.71.0
Changes: http://www.boost.org/users/history/version_1_71_0.html
PR: 238827
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D20774 |
3.4.1_2
26 Jul 2019 20:46:57
|
gerald |
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330 |
3.4.1_1
25 Apr 2019 13:25:50
|
antoine |
Clean up plist |
3.4.1_1
12 Apr 2019 06:36:31
|
jbeich |
devel/boost-*: update to 1.70.0
Changes: http://www.boost.org/users/history/version_1_70_0.html
PR: 235956
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D19303 |
3.4.1
24 Feb 2019 16:04:58
|
jwb |
biology/unanimity: Upgrade to 3.4.1
Minor fixes and enhancements upstream. |
3.4.0
22 Feb 2019 23:26:02
|
antoine |
biology/unanimity is not compatible with python 3.x
PR: 234633 |
3.4.0
20 Feb 2019 01:36:51
|
jwb |
biology/unanimity: Upgrade to 3.4.0
Switch from cmake to new meson build system
Tests disabled for now pending work on unbundling googletest |
3.1.0_2
25 Dec 2018 20:25:40
|
tcberner |
Change cmake default behaviour to outsource.
Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".
I tried to only set insource where explictely needed.
PR: 232038
Exp-run by: antoine |
3.1.0_2
12 Dec 2018 01:35:36
|
gerald |
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590 |
3.1.0_1
12 Dec 2018 00:15:50
|
jbeich |
devel/boost-*: update to 1.69.0
Changes: http://www.boost.org/users/history/version_1_69_0.html
PR: 232525
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D17645 |
3.1.0
18 Sep 2018 08:14:23
|
linimon |
More precisely specify USES=compiler to fix build on gcc-based
platforms such as powerpc64.
Tested on powerpc64, amd64.
Approved by: portmgr (tier-2 blanket) |
3.1.0
25 Aug 2018 22:54:54
|
jwb |
biology/unanimity: Upgrade to latest release, soften dep version requirements
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D16902 |
g20180307_1
09 Aug 2018 06:58:31
|
jbeich |
devel/boost-*: update to 1.68.0
- Switch to C++14 for libboost_system to support C++14 consumers
Changes: http://www.boost.org/users/history/version_1_68_0.html
PR: 229569
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D16165 |
g20180307
22 Jun 2018 00:03:08
|
linimon |
Mark these ports as broken on aarch64.
Approved by: portmgr (tier-2 blanket) |
g20180307
24 Apr 2018 14:16:46
|
jwb |
biology/unanimity: Pacific Biosciences consensus library and applications
Reviewed by: jrm
Differential Revision: https://reviews.freebsd.org/D15172 |
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