Port details |
- unikmer Toolkit for nucleic acid k-mer analysis, set operations on k-mers
- 0.20.0_3 biology =2 0.20.0_3Version of this port present on the latest quarterly branch.
- Maintainer: yuri@FreeBSD.org
- Port Added: 2021-05-26 22:27:12
- Last Update: 2025-01-06 04:01:04
- Commit Hash: ae2e973
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- License: MIT
- WWW:
- https://bioinf.shenwei.me/unikmer/
- https://github.com/shenwei356/unikmer
- Description:
- unikmer is a golang package and a toolkit for nucleic acid k-mer analysis,
providing functions including set operation k-mers (sketch) optional with
TaxIds but without count information.
K-mers are either encoded (k<=32) or hashed (arbitrary k) into uint64, and
serialized in binary file with extension .unik.
TaxIds can be assigned when counting k-mers from genome sequences, and LCA
(Lowest Common Ancestor) is computed during set opertions including
computing union, intersecton, set difference, unique and repeated k-mers.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- unikmer>0:biology/unikmer
- To install the port:
- cd /usr/ports/biology/unikmer/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/unikmer
- pkg install unikmer
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: unikmer
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1718108535
SHA256 (go/biology_unikmer/unikmer-v0.20.0/v0.20.0.mod) = c0a619c514e9cf08be0a50dc494e8e890446a40d4b82043a2624b215ecc6b65e
SIZE (go/biology_unikmer/unikmer-v0.20.0/v0.20.0.mod) = 1455
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- go121 : lang/go121
- Test dependencies:
-
- csvtk : science/csvtk
- perl5>=5.36<5.37 : lang/perl5.36
- Fetch dependencies:
-
- go121 : lang/go121
- ca_root_nss>0 : security/ca_root_nss
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- biology_unikmer
- USES:
- go:modules perl5 zip
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
Commit | Credits | Log message |
0.20.0_3 06 Jan 2025 04:01:04 |
Yuri Victorovich (yuri) |
biology/unikmer: Update WWW |
0.20.0_3 09 Aug 2024 06:24:08 |
Ashish SHUKLA (ashish) |
all: Bump after lang/go121 update |
0.20.0_2 03 Jul 2024 08:29:54 |
Ashish SHUKLA (ashish) |
all: Bump after lang/go121 update |
0.20.0_1 15 Jun 2024 09:52:17 |
Ashish SHUKLA (ashish) |
all: Bump after lang/go121 update
MFH: 2024Q2 |
0.20.0 11 Jun 2024 17:11:41 |
Yuri Victorovich (yuri) Author: Älven |
biology/unikmer: update 0.19.1 → 0.20.0
PR: 279674 |
0.19.1_13 25 May 2024 00:11:39 |
Yuri Victorovich (yuri) |
biology/unikmer: Add PORTSCOUT line |
0.19.1_13 13 May 2024 17:56:04 |
Ashish SHUKLA (ashish) |
all: Bump after lang/go121 update
MFH: 2024Q2 |
0.19.1_12 15 Apr 2024 08:20:04 |
Ashish SHUKLA (ashish) |
all: Bump after lang/go121 update
MFH: 2024Q2 |
0.19.1_11 24 Mar 2024 14:29:00 |
Muhammad Moinur Rahman (bofh) |
lang/go: Change DEFAULT to 1.21
PR: 277776
Approved by: portmgr (exp-run) |
0.19.1_10 11 Feb 2024 10:39:17 |
Ashish SHUKLA (ashish) |
all: Bump PORTREVISION after lang/go* update
PR: 276530 |
0.19.1_9 07 Dec 2023 02:22:10 |
Ashish SHUKLA (ashish) |
all: Bump PORTREVISION after lang/go* update
PR: 274405 |
0.19.1_8 08 Sep 2023 14:34:56 |
Dmitri Goutnik (dmgk) |
all: Bump PORTREVISION after lang/go* update |
0.19.1_7 04 Aug 2023 14:24:50 |
Dmitri Goutnik (dmgk) |
all: Bump PORTREVISION after lang/go{119,120} update |
0.19.1_6 08 Apr 2023 15:13:25 |
Dmitri Goutnik (dmgk) |
all: Bump PORTREVISION after lang/go{119,120} update |
0.19.1_5 22 Mar 2023 20:15:16 |
Robert Clausecker (fuz) |
biology/unikmer: fix build on riscv64
Bump golang.org/x/sys dependency to a version new enough
to support riscv64-freebsd.
Sponsored by: Berliner Linux User Group e.V.
Approved by: portmgr (build fix blanket) |
0.19.1_4 09 Mar 2023 19:18:07 |
Dmitri Goutnik (dmgk) |
all: Bump PORTREVISION after Go ports update |
0.19.1_3 15 Feb 2023 19:06:01 |
Dmitri Goutnik (dmgk) |
all: Bump PORTREVISION after lang/go{119,120} update |
0.19.1_2 09 Feb 2023 21:55:23 |
Dmitri Goutnik (dmgk) |
all: Bump PORTREVISION after GO_DEFAULT update. |
0.19.1_1 14 Jan 2023 11:31:17 |
Dmitri Goutnik (dmgk) |
all: Bump PORTVERSION after lang/go{118,119} update |
0.19.1 27 Dec 2022 07:50:56 |
Yuri Victorovich (yuri) |
biology/unikmer: Update 0.19.0 -> 0.19.1
Reported by: portscout |
0.19.0_6 11 Dec 2022 11:17:27 |
Dmitri Goutnik (dmgk) |
all: Bump PORTREVISION after lang/go{118,119} update |
0.19.0_5 06 Oct 2022 19:24:26 |
Dmitri Goutnik (dmgk) |
all: Bump PORTREVISION after lang/go{118,119} update |
0.19.0_4 08 Sep 2022 16:33:18 |
Dmitri Goutnik (dmgk) |
all: Bump PORTREVISION after lang/go{118,119} update |
07 Sep 2022 21:58:51 |
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
0.19.0_3 07 Sep 2022 21:10:59 |
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above ) |
0.19.0_3 03 Aug 2022 21:35:13 |
Dmitri Goutnik (dmgk) |
all: Bump PORTREVISION after Go update
Bump Go ports PORTREVISION after GO_DEFAULT and lang/go118 update. |
0.19.0_2 14 Jul 2022 12:46:05 |
Dmitri Goutnik (dmgk) |
all: Bump PORTREVISION after lang/go{117,118} update |
0.19.0_1 07 Jun 2022 21:56:10 |
Dmitri Goutnik (dmgk) |
*/*: Bump port revisons after lang/go{117,118} update |
0.19.0 26 Apr 2022 18:51:57 |
Yuri Victorovich (yuri) |
biology/unikmer: Update 0.18.8 -> 0.19.0
Reported by: portscout |
0.18.8_1 30 Mar 2022 07:01:44 |
Guangyuan Yang (ygy) |
*/*: Bump PORTREVISION after lang/go 1.18 update |
0.18.8 26 Sep 2021 08:54:07 |
Yuri Victorovich (yuri) |
biology/unikmer: Update 0.18.4 -> 0.18.8
Reported by: portscout |
0.18.4 03 Sep 2021 13:01:58 |
Tobias Kortkamp (tobik) |
*: Clean up some things
- Fix typos
- Remove duplicate variables
- Remove nop or unreferenced variables
- Add missing ports to the build
- Clean up commented PORTREVISION
- Add missing USES
Reported by: portscan |
0.18.4 24 Aug 2021 17:10:11 |
Yuri Victorovich (yuri) |
biology/unikmer: Update 0.18.3 -> 0.18.4
Reported by: portscout |
0.18.3 14 Aug 2021 18:35:11 |
Yuri Victorovich (yuri) |
biology/unikmer: Add 'test' target |
0.18.3 28 Jul 2021 17:13:47 |
Yuri Victorovich (yuri) |
biology/unikmer: Update 0.18.1 -> 0.18.3
Reported by: portscout |
0.18.1 24 Jun 2021 22:06:35 |
Yuri Victorovich (yuri) |
biology/unikmer: Update 0.18.0 -> 0.18.1
Reported by: portscout |
0.18.0 26 May 2021 22:25:21 |
Yuri Victorovich (yuri) |
biology/unikmer: New port: Toolkit for nucleic acid k-mer analysis, set
operations on k-mers |