unikmer is a golang package and a toolkit for nucleic acid k-mer analysis,
providing functions including set operation k-mers (sketch) optional with
TaxIds but without count information.
K-mers are either encoded (k<=32) or hashed (arbitrary k) into uint64, and
serialized in binary file with extension .unik.
TaxIds can be assigned when counting k-mers from genome sequences, and LCA
(Lowest Common Ancestor) is computed during set opertions including
computing union, intersecton, set difference, unique and repeated k-mers.
go: Bump go124-dependent ports
Earlier I bumped the default Go to 1.24. Ports that specify a lower
version will still build with those lower version (for now), so they
don't need a bumping. Instead I'm bumping anything that (now) has go124
as a dependency.
biology/unikmer: fix build on riscv64
Bump golang.org/x/sys dependency to a version new enough
to support riscv64-freebsd.
Sponsored by: Berliner Linux User Group e.V.
Approved by: portmgr (build fix blanket)
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
