| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.0.12
25 Nov 2024 14:49:37
     |
Jason W. Bacon (jwb)  |
biology/vcflib: Update to 1.0.12
A few fixes and enhancements
Changes: https://github.com/vcflib/vcflib/releases
Reported by: portscout |
1.0.10
20 May 2024 14:42:43
|
Jan Beich (jbeich) |
biology/vcflib: add upstream reference for zig >= 0.11 |
1.0.10
22 Apr 2024 12:42:04
|
Jason W. Bacon (jwb) |
biology/vcflib: Update to 1.0.10
A few bug fixes and code cleanup
Changes: https://github.com/vcflib/vcflib/releases
Reported by: portscout |
1.0.7_1
02 Mar 2024 20:35:56
|
Nuno Teixeira (eduardo) |
biology/vcflib: Move man pages to share/man
Approved by: portmgr (blanket) |
1.0.7
01 Jan 2024 05:37:19
|
Jan Beich (jbeich)
Author: Nathan Fisher |
lang/zig: update to 0.11.0
Changes: https://ziglang.org/download/0.11.0/release-notes.html
PR: 273124
Approved by: dch (maintainer) |
1.0.7
30 Jul 2023 22:59:09
|
Robert Clausecker (fuz) |
biology/vcflib: not for armv6/7
Requires OpenMP which is not supported on armv6/armv7.
Approved by: portmgr (build fix blanket)
MFH: 2023Q3 |
1.0.7
09 Feb 2023 15:35:32
|
Jason W. Bacon (jwb) |
biology/vcflib: Update to 1.0.7
Fixes regression in 1.0.6
Made Zig language support a default off option
Zig is experimental and problematic
Reported by: portscout |
1.0.6_1
31 Jan 2023 16:25:33
|
Jason W. Bacon (jwb) |
biology/vcflib: Unbreak build on aarch64, probably others
Patch out hard-coded -march=native, not supported by clang aarch64 |
1.0.6
30 Jan 2023 22:05:19
|
Jason W. Bacon (jwb) |
biology/vcflib: Update to 1.0.6
A few minor upstream fixes
Unbundle WFA2-lib, which may be useful outside vcflib
Update some submodules to latest commit (no recent releases available) |
1.0.5_2
26 Jan 2023 14:14:07
|
Jason W. Bacon (jwb) |
biology/vcflib: Patch in time.h for struct timespec
Forgot to add patch file to repo during upgrade
Needed on 12.3-RELEASE |
1.0.5_1
23 Jan 2023 23:51:41
|
Jan Beich (jbeich) |
lang/zig: rebuild consumers after 91552559ae79
Propagate standard library and miscompilation fixes into binary packages. |
1.0.5
22 Jan 2023 17:13:14
|
Jason W. Bacon (jwb) |
biology/vcflib: Update to 1.0.5
Numerous new features and enhancements
Changes: https://github.com/vcflib/vcflib/tags
Reported by: portscout |
1.0.3_1
06 Jan 2023 01:29:53
|
Jason W. Bacon (jwb) |
biology/vcflib: Bump PORTREVISION for biology/htslib update |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.0.3
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.0.3
29 Jun 2022 14:53:54
|
Stefan Eßer (se) |
Fix CONFLICTS_INSTALL in benchmarks and biology
Approved by: portmgr (implicit) |
1.0.3
06 Feb 2022 18:36:07
|
Stefan Eßer (se) |
Update CONFLICTS definitions in categories a* to c*
Update the CONFLICTS definitions of ports in the following categories:
- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters
An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.
There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.
Approved by: portmgr (implicit) |
1.0.3
28 Jan 2022 00:09:13
|
Jason W. Bacon (jwb) |
biology/vcflib: Update to 1.0.3
Several new commands
A few bug fixes and enhancements
Changes: https://github.com/vcflib/vcflib/tags
Reported by: portscout |
1.0.2
16 Dec 2021 21:49:25
|
Piotr Kubaj (pkubaj) |
biology/vcflib: unbreak on riscv64 |
1.0.2
04 Nov 2021 14:23:17
|
Jason W. Bacon (jwb) |
biology/vcflib: Update to 1.0.2
Switch to github submodules for most deps rather than patch build system
Fixes build on powerpc64 and aarch64, possibly others
Changes: https://github.com/vcflib/vcflib/tags
PR: 259622
Reported by: pkubaj |
1.0.0.r1.130_1
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
1.0.0.r1.130_1
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.0.0.r1.130_1
28 Mar 2021 16:39:24
  |
pkubaj |
biology/vcflib: fix build on powerpc64le
Use GCC for its SSE -> AltiVec translation:
In file included from src/ssw.cpp:38:
In file included from /usr/lib/clang/11.0.1/include/emmintrin.h:13:
In file included from /usr/lib/clang/11.0.1/include/xmmintrin.h:13:
/usr/lib/clang/11.0.1/include/mmintrin.h:33:5: error: use of undeclared
identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'?
__builtin_ia32_emms(); |
1.0.0.r1.130_1
02 Jan 2021 01:46:09
|
linimon |
For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
them BROKEN.
While here, pet portlint (Makevar order).
Approved by: portmgr (tier-2 blanket) |
1.0.0.r1.130_1
03 Aug 2020 17:40:04
|
jwb |
biology/htslib: Upgrade to 1.10.2
Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags
Bump PORTREVISION on dependents that don't require additional patching
PR: 248089 |
1.0.0.r1.130
22 Jun 2018 00:03:08
|
linimon |
Mark these ports as broken on aarch64.
Approved by: portmgr (tier-2 blanket) |
1.0.0.r1.130
17 Apr 2018 03:11:39
|
jwb |
biology/vcflib: C++ library and CLI tools for parsing and manipulating VCF files
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D15109 |
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