devel/RStudio: Fix build after recent boost update

*/*: bump consumers after devel/boost* update

With hat:	office
Sponsored by:	Future Crew, LLC

devel/RStudio: Revert "feat(create-turbo): apply official-starter transform"

This reverts commit 52c0456dd5ec259ac94ee401db79c7ad3569f914.

I have no idea what lead to this commit into devel/RStudio and
lang/rust-nightly to be made.

feat(create-turbo): apply official-starter transform

devel/RStudio: Remove QWebKit dependency

It was not used.

devel/RStudio: Mark DEPRECATED

- Depends on deprecated www/qt5-webkit
- Set EXPIRATION_DATE 2023-11-26
Approved by:	portmgr (blanket)

devel/RStudio: Fix bug that RStudio-server didn't have /usr/local/bin in PATH

This was previously fixed in post-install but the previous fix
relied on the other path that changed, which eroded this fix.

The new fix adds /usr/local/bin to PATH in the C++ code.

devel/RStudio: Fix crash caused by the std::bad_cast exception in RStudio-server

This caused users to be unable to log in.
The workround is now in place.

audio/opus: bump consumers after update to 1.4

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

devel/RStudio: Update license

devel/RStudio: Fix build by adding #include <set>

Reported by:	fallout

devel/RStudio: Update 2022.07.2+576 -> 2022.12.0+353

devel/RStudio: Update 2022.07.1+554 -> 2022.07.2+576

Reported by:	portscout

Mk/Uses: always use colon for build/run suffix

Most USES use a colon for build/run(/test) suffixes. Change kde.mk,
qt.mk and pyqt.mk to do the same, and update all ports using that.

Document in CHANGES.

PR:			266034
Exp-run by:		antoine
Approved by:		tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D36349

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

*/*: bump all consumers after recent boost upgrade

devel/RStudio: Update 2022.07.0+548 -> 2022.07.1+554

Reported by:	portscout

devel/RStudio: Update 2022.02.3+492 -> 2022.07.0+548

Reported by:	portscout

devel/RStudio: Update 2022.02.2+485 -> 2022.02.3+492

Reported by:	portscout

devel/RStudio: Not broken

The BROKEN line was added by mistake.

cleanup: remove expired versions of OpenJDK (12 through 16)

Adjust ports depending on expired versions of OpenJDK:
- biology/snpeff: 12+ -> 17+
- devel/RStudio: 12 -> 11
- www/closure-compiler: 13 -> 11+

Allow java/openjdk17 to use java/openjdk17-bootstrap on i386
too, this builds just fine on 13.1-i386

Remove jdk12-doc as it is no longer relevant.

Clean up Java version calculations in bsd.java.mk

Reviewed by: jwb, java (glewis)

Differential Revision: https://reviews.freebsd.org/D35280

devel/RStudio: mark as BROKEN after boost upgrade

PR:	246106

devel/RStudio: Switch to Java 12 in an attempt to fix Java crash on aarch64

Reported by:	fallout

devel/RStudio: Update 2022.02.1+461 -> 2022.02.2+485

Reported by:	portscout

devel/RStudio: Not install rstudio.desktop

devel/RStudio: Update 2022.02.0+443 -> 2022.02.1+461

devel/RStudio: Update 2021.09.2+382 -> 2022.02.0+443

Reported by:	portscout

cleanup: remove transitive py27 deprecation (www/qt5-webengine)

devel/RStudio: Update 2021.09.1+372 -> 2021.09.2+382

Reported by:	portscout

devel/RStudio: Update 2021.09.0+351 -> 2021.09.1+372

Reported by:	portscout

devel/RStudio: Update 1.4.1717 -> 2021.09.0+351

devel/RStudio: Fix bug in RStudio-server that gmake isn't in the path

When R modules are installed gmake is needed, but it wasn't in the path
in the server flavor of the port. The patch adds the gmake symlink to
the directory which is in the path.

A better fix will be provided later, pending fix in RStudio, see Makefile.

Also adjust poudriere.conf instructions.

devel/RStudio: Make build print ulimit -n

devel/RStudio: Make build to print the limit on number of open files.

devel/yaml-cpp: Update to 0.7.0

- Patch cmake include to actually work
- Bump PORTREVISION on consumers, testing shows it is not completely
  binary compatible

devel/RStudio: Update 1.3.1093 -> 1.4.1717

One more small cleanup, forgotten yesterday.
Reported by:	lwhsu

all: Remove all other $FreeBSD keywords.

Remove # $FreeBSD$ from Makefiles.

Mark ports recursively depending on Python 2.7 for expiration on June 23.

For ports optionally dependending on Python 2.7, just mark those options
as expired. Remove konquerer from the x11/kde-baseapps metaport and bump
its PORTREVISION.

Submitted by:	rene
Reviewed by:	portmgr, adridg, ehaupt, lme, madpilot, pizzamig, se, sunpoet, yuri
Approved by:	portmgr
Differential Revision:	https://reviews.freebsd.org/D28665

devel/RStudio: Fix typos in pkg-message

devel/RStudio: Add bug workaround description to pkg-message

devel/RStudio: Add rc script for the 'server' flavor/mode

Also
* Remove redundant dependencies for the 'server' flavor
* Improve COMMENT for the 'desktop' flavor
* Remove unnecessary shebang and file in the 'server' flavor

devel/RStudio: Flavorize into 'desktop' and 'server' flavors

The RStudio project builds in two modes: Desktop and Server.

These modes are now reflected as port flavors.

devel/RStudio: Update 1.3.1073 -> 1.3.1093

Reported by:	portscout

devel/RStudio: Update 1.3.1056 -> 1.3.1073

Reported by:	portscout

devel/RStudio: Update 1.3.959 -> 1.3.1056

Reported by:	portscout

devel/RStudio: Update 1.2.5042 -> 1.3.959

Reported by:	portscout

devel/RStudio: Unbreak the build after math/R upgrade to 4.0.0

Backport the patch.

PR:		246310
Reported by:	fallout, Robert Cina <transitive@gmail.com>

devel/RStudio: Update 1.2.5033-2752 -> 1.2.5042

Reported by:	portscout

devel/RStudio: Update 1.2.5033 -> 1.2.5033-2752

Unbreak by switching to Java-13.

Mark BROKEN: fails to build

gwtc:
     [java] Feb 05, 2020 4:44:59 PM java.util.prefs.FileSystemPreferences$1 run
     [java] INFO: Created user preferences directory.
     [java] [ERROR] Unexpected internal compiler error
     [java] java.lang.UnsatisfiedLinkError:
sun.nio.fs.LinuxWatchService.inotifyInit()I
     [java] 	at sun.nio.fs.LinuxWatchService.inotifyInit(Native Method)
     [java] 	at sun.nio.fs.LinuxWatchService.<init>(LinuxWatchService.java:59)
     [java] 	at sun.nio.fs.BsdFileSystem.newWatchService(BsdFileSystem.java:51)
     [java] 	at
com.google.gwt.dev.resource.impl.ResourceAccumulator.maybeInitializeWatchService(ResourceAccumulator.java:98)
     [java] 	at
com.google.gwt.dev.resource.impl.ResourceAccumulator.fullRefresh(ResourceAccumulator.java:89)
     [java] 	at
com.google.gwt.dev.resource.impl.ResourceAccumulator.refreshResources(ResourceAccumulator.java:69)
     [java] 	at
com.google.gwt.dev.resource.impl.ResourceAccumulatorManager.getResources(ResourceAccumulatorManager.java:113)
     [java] 	at
com.google.gwt.dev.resource.impl.DirectoryClassPathEntry.findApplicableResources(DirectoryClassPathEntry.java:49)

devel/RStudio: Add BROKEN_i386

Reported by:	fallout

devel/RStudio: Update 1.2.5019 -> 1.2.5033

Reported by:	portscout

devel/boost-*: update to 1.72.0

Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136

devel/RStudio: Add JAVA_HOME to MAKE_ENV and the executable to eliminate
potential ambiguity

Suggested by:	Rainer Hurling <rhurlin@gwdg.de>

devel/RStudio: unbreak with boost 1.72

src/cpp/core/FilePath.cpp:1035:37: error: no member named 'level' in
'boost::filesystem::recursive_directory_iterator'
         if (!iterationFunction(itr.level(),
                                ~~~ ^

Suggested by:	upstream

devel/RStudio: Update 1.2.5001 -> 1.2.5019

Reported by:	portscout

devel/RStudio: Update 1.2.1335 -> 1.2.5001

devel/RStudio: unbreak

PR:		236603
Obtained from:	upstream

devel/boost-*: update to 1.71.0

Changes:	http://www.boost.org/users/history/version_1_71_0.html
PR:		238827
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D20774

Convert to UCL & cleanup pkg-message (categories d)

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

devel/boost-*: update to 1.70.0

Changes:	http://www.boost.org/users/history/version_1_70_0.html
PR:		235956
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D19303

devel/RStudio: Update 1.2.1330 -> 1.2.1335

Reported by:	portscout

devel/RStudio: Update 1.2.1320 -> 1.2.1330

Reported by:	portscout

devel/websocketpp: unbreak with boost 1.70

PR:		236589

devel/RStudio: Update 1.2.679 -> 1.2.1320

* Update WWW
* Various trivial patch and Makefile updates

Fix Qt5 symbol version scripts to put the catch-all clause first.  When
a symbol matches multiple clauses the last one takes precedence.  If the
catch-all is last it captures everything.  In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API.  This only affects lld because GNU ld always gives the
catch-all lowest priority.

Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium.  Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3]  The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one.  If there's no such non-weak symbol the call

Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

devel/boost-*: update to 1.69.0

Changes:	http://www.boost.org/users/history/version_1_69_0.html
PR:		232525
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D17645

Merge lang/qt5-qml and x11-toolkits/qt5-quick into x11-toolkits/qt5-declarative

- There was no obvious reason to split these ports, and it makes
  porting simpler; the set of ports using either mostly coincided.

Exp-run by:	antoine
PR:		223687
PR:		232751

devel/RStudio: switch to Boost.Signals2

PR:		232924
Submitted by:	jbeich

devel/RStudio: Fix the gcc version in LD_PRELOAD to be based on GCC_DEFAULT

PR:		232923
Reported by:	jbeich

devel/RStudio: add more boost 1.69 fixes

- r483800 unconditionally removed signals from find_package(Boost)
  without switching to signals2 for Boost < 1.69

PR:		232525
Obtained from:	upstream

devel/RStudio: unbreak with boost 1.69

CMake Error at /usr/local/share/cmake/Modules/FindBoost.cmake:2049 (message):
  Unable to find the requested Boost libraries.

  Boost version: 1.69.0

  Boost include path: /usr/local/include

  Could not find the following Boost libraries:

          boost_signals

  Some (but not all) of the required Boost libraries were found.  You may
  need to install these additional Boost libraries.  Alternatively, set

devel/boost-*: update to 1.68.0

- Switch to C++14 for libboost_system to support C++14 consumers

Changes:	http://www.boost.org/users/history/version_1_68_0.html
PR:		229569
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D16165

Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk

From now on, ports that depend on Qt4 will have to set
	USES=		qt:4
	USE_QT=		foo bar
ports depending on Qt5 will use
	USES=		qt:5
	USE_QT=		foo bar

PR:		229225
Exp-run by:	antoine
Reviewed by:	mat
Approved by:	portmgr (antoine)
Differential Revision:	-https://reviews.freebsd.org/D15540

devel/RStudio: Update 1.2.637 -> 1.2.679

Port changes:
* Remove PATCHFILES that are now applied upstream
* Add the bundled dependency on trestletech/plumber which is an
  R-specific project

Reported by:	portscout

devel/RStudio: Update 1.1.453 -> 1.2.637

Port changes:
* Add to PATCHFILES for corrections that the upstream made needed to build on
FreeBSD
* Add USES=ssl
* Add USE_QT5=webengine
* Update GWT_VERSION/GIN_VERSION - versions of side-projects needed to build
RStudio
* Implemented the FreeBSD-specific version of getOpenFds included in the
PosixSystem.cpp patch
* Added numerous corrections to the PosixSystem.cpp patch
* Now rstudio and other related executables depend on libprocstat.so -
corresponding patches were added

Reported by:	portscout

devel/RStudio: Remove the bogus comment

PR:		228289

devel/RStudio: Fix clang6/boost build errors

Add the upstream commit
https://github.com/rstudio/rstudio/commit/ab3d4355ab5c7f4bc7af1f7aeabe62c3d1bbccec
that is supposed to fix clang6/boost build errors.

PR:		228289

devel/RStudio: 1.1.451 -> 1.1.453

Reported by:	portscout

devel/RStudio: Update 1.1.449 -> 1.1.451

Reported by:	portscout

devel/RStudio: Update 1.1.448 -> 1.1.449

Reported by:	portscout

devel/RStudio: Update 1.1.447 -> 1.1.448

Reported by:	portscout

devel/RStudio: Add safeguards agaist running without /proc mounted

Port changes:
* Add check that /proc is mounted that fails when it is not
* Add pkg-message warning users about the need to have /proc mounted
* Fix typo in passing arguments in the shell script bin/rstudio

Reported by:	Kostas Oikonomou <ko@research.att.com> (user)

devel/RStudio: Update 1.1.445 -> 1.1.447

Reported by:	portscout

devel/boost-*: update to 1.67.0

Changes:	http://www.boost.org/users/history/version_1_67_0.html
PR:		227427
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D15030

devel/RStudio: unbreak with boost 1.67

src/cpp/core/DateTime.cpp:68:26: error: no matching conversion for
functional-style cast from 'double' to 'boost::posix_time::seconds'
   return time_t_epoch + seconds(sec);
                         ^~~~~~~~~~~
/usr/local/include/boost/date_time/posix_time/posix_time_duration.hpp:53:30:
note: candidate constructor (the implicit copy constructor) not viable: no known
conversion from 'double' to 'const boost::posix_time::seconds' for 1st argument
  class BOOST_SYMBOL_VISIBLE seconds : public time_duration
                             ^
/usr/local/include/boost/date_time/posix_time/posix_time_duration.hpp:58:37:
note: candidate template ignored: disabled by 'enable_if' [with T = double]
          typename boost::enable_if<boost::is_integral<T>, void>::type* = 0) :
                                    ^

PR:		227427
Reported by:	antoine (via exp-run)

devel/RStudio: Update 1.1.444 -> 1.1.445

Reported by:	portscout

devel/RStudio: Update 1.1.443 -> 1.1.444

Reported by:	portscout

devel/RStudio: Update 1.1.442 -> 1.1.443

devel/RStudio: Update to 1.1.442

Changelog is in:
https://support.rstudio.com/hc/en-us/articles/200716783-RStudio-Release-History

Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).