Port details |
- p5-Algorithm-Cluster Perl interface to C clustering library
- 1.59 devel =2 1.59Version of this port present on the latest quarterly branch.
- Maintainer: perl@FreeBSD.org
- Port Added: 2004-05-21 08:32:45
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
- Also Listed In: perl5
- License: ART10 GPLv1+
- WWW:
- https://metacpan.org/release/Algorithm-Cluster
- Description:
- This module is an interface to the C Clustering Library, a general
purpose library implementing functions for hierarchical clustering
(pairwise simple, complete, average, and centroid linkage),
along with k-means and k-medians clustering, and 2D self-organizing maps.
The library is distributed along with Cluster 3.0, an enhanced version
of the famous Cluster program originally written by Michael Eisen
while at Stanford University. The C clustering library was written
by Michiel de Hoon.
This module is a Perl wrapper for the C clustering library for
cDNA microarray data, Copyright (C) 2002 Michiel Jan Laurens de Hoon.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- p5-Algorithm-Cluster>0:devel/p5-Algorithm-Cluster
- To install the port:
- cd /usr/ports/devel/p5-Algorithm-Cluster/ && make install clean
- To add the package, run one of these commands:
- pkg install devel/p5-Algorithm-Cluster
- pkg install p5-Algorithm-Cluster
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: p5-Algorithm-Cluster
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1567292082
SHA256 (Algorithm-Cluster-1.59.tar.gz) = cb53da17f502aa8d9285e151111d7c59f989078241f687b59ef3db0dd71dfcdf
SIZE (Algorithm-Cluster-1.59.tar.gz) = 461420
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Runtime dependencies:
-
- perl5>=5.32.r0<5.33 : lang/perl5.32
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- devel_p5-Algorithm-Cluster
- USES:
- perl5
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
Commit | Credits | Log message |
07 Sep 2022 21:58:51 |
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.59 07 Sep 2022 21:10:59 |
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above ) |
1.59 20 Jul 2022 14:21:35 |
Tobias C. Berner (tcberner) |
devel: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* "Waitman Gobble" <uzimac@da3m0n8t3r.com>
* <jkoshy@FreeBSD.org>
* Aaron Dalton <aaron@FreeBSD.org>
* Aaron Dalton <aaron@daltons.ca>
* Aaron H. K. Diep <ahkdiep@gmail.com>
* Aaron Hurt <ahurt@anbcs.com>
* Abel Chow <abel_chow@yahoo.com>
* Adam McLaurin
* Adam Saponara <as@php.net>
* Adam Weinberger <adamw@FreeBSD.org>
* Ade Lovett <ade@FreeBSD.org> (Only the first 15 lines of the commit message are shown above ) |
1.59 15 Jun 2021 08:41:00 |
Piotr Kubaj (pkubaj) |
devel/p5-Algorithm-Cluster: same issue on powerpc as on i386 |
1.59 09 Jun 2021 00:31:08 |
Piotr Kubaj (pkubaj) |
devel/p5-Algorithm-Cluster: fix build on i386
It's enough to simply use ld.bfd for linking, but ports framework forces ports
with USE_PERL5=configure to use ${CC} as LD. |
1.59 06 Apr 2021 14:31:07 |
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.59 14 Sep 2019 19:18:02 |
antoine |
Mark BROKEN on i386 with lld
MFH: 2019Q3 |
1.59 31 Aug 2019 23:29:49 |
sunpoet |
Update to 1.59 |
1.58 27 Apr 2019 18:27:13 |
sunpoet |
Update to 1.58 |
1.57 18 Apr 2019 14:44:47 |
mat |
Add a few BROKEN on 13/i386.
Reported by: pkg-fallout |
1.57 24 Nov 2018 22:30:40 |
sunpoet |
Update to 1.57
- Add LICENSE
Changes: https://metacpan.org/pod/Algorithm::Cluster#CHANGES |
1.56 27 May 2018 20:15:20 |
sunpoet |
Update WWW
search.cpan.org is shutting down.
It will redirect to metacpan.org after June 25, 2018.
With hat: perl |
1.56 30 Apr 2018 17:08:57 |
sunpoet |
Update to 1.56 |
1.53 22 Aug 2017 16:40:28 |
sunpoet |
Update to 1.53
- Strip shared library |
1.52_1 19 May 2016 10:21:25 |
amdmi3 |
- Fix trailing whitespace in pkg-descrs, categories [a-f]*
Approved by: portmgr blanket |
1.52_1 12 Mar 2015 23:00:03 |
adamw |
Some OCD cleanups on some of the perl@ ports.
- Remove dependencies in core
- Put testing depends in TEST_DEPENDS
- Remove unnecessary bsd.port.options.mk inclusions
- Remove checks for Perl versions that no longer exist in the ports tree
- Sort plists, some of which were so jumbled that I have to assume
the plist was randomized before committing
A lot of the plist changes in this commit are moving PERL5_MAN3 after
SITE_PERL. It's repo churn now, but it makes updating the ports later
far easier. |
1.52_1 26 Nov 2014 13:08:38 |
mat |
Change the way Perl modules are installed, update the default Perl to 5.18.
Before, we had:
site_perl : lib/perl5/site_perl/5.18
site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
perl_man3 : lib/perl5/5.18/man/man3
Now we have:
site_perl : lib/perl5/site_perl
site_arch : lib/perl5/site_perl/mach/5.18
perl_man3 : lib/perl5/site_perl/man/man3
Modules without any .so will be installed at the same place regardless of the (Only the first 15 lines of the commit message are shown above ) |
1.52 27 Oct 2014 10:55:59 |
bapt |
Cleanup plist |
1.52 10 Jun 2014 12:14:14 |
mat |
Remove all the bootstrap files (.bs) from the plists.
Starting with perl 5.20, they're not installed any more if empty,
and on FreeBSD, they're (always ?) empty.
PR: 190681
Submitted by: mat
Exp-Run by: antoine
Sponsored by: Absolight |
1.52 27 Oct 2013 12:17:59 |
vanilla |
support STAGEDIR. |
1.52 20 Sep 2013 17:13:47 |
bapt |
Add NO_STAGE all over the place in preparation for the staging support (cat:
devel part 3) |
1.52 29 Aug 2013 17:16:53 |
sunpoet |
- Add WWW
- Use single space after WWW:
- Remove Author line |
1.52 05 Aug 2013 12:14:08 |
culot |
- Update to 1.52
Changes: http://search.cpan.org/dist/Algorithm-Cluster/perl/Cluster.pm#CHANGES |
1.50 02 Aug 2013 18:52:11 |
mat |
- Convert to new perl framework
- Trim Makefile header
- Remove MAKE_JOBS_SAFE=yes, it's the default. |
1.50 29 Mar 2013 00:44:54 |
eadler |
For perl@ owned ports:
- Fix COMMENT
- Trim header |
1.50 20 Jun 2011 08:36:20 |
az |
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
See http://wiki.freebsd.org/Perl for details.
- Change maintainership from ports@ to perl@ for ports in this changeset.
- Remove MD5 checksum |
1.50 29 Dec 2010 07:05:30 |
wen |
- Update to 1.50 |
1.49 07 Dec 2010 19:35:25 |
linimon |
With portmgr hat, reassign some ports from clsung to perl, since clsung
is apparently having some trouble with email. |
1.49 23 Aug 2010 03:57:40 |
pgollucci |
- Update to 1.49
Changes: http://search.cpan.org/dist/Algorithm-Cluster/Changes
PR: ports/147608
Submitted by: pgollucci (myself)
Approved by: maintainer timeout (clsung; > 2.5 months) |
1.47 11 Dec 2009 08:35:38 |
clsung |
- Update to 1.47 |
1.46 18 Jun 2009 08:07:18 |
clsung |
- Update to 1.46 |
1.45 31 May 2009 14:47:47 |
clsung |
- Update to 1.45
PR: ports/134797
Submitted by: pgollucci |
1.44 24 Apr 2009 06:53:23 |
clsung |
- Update to 1.44
PR: ports/133597
Submitted by: leeym |
1.42 27 Sep 2008 10:28:40 |
clsung |
- Update to 1.42 |
1.41 04 Sep 2008 14:55:59 |
clsung |
- Update to 1.41 |
1.40 28 Aug 2008 00:25:47 |
clsung |
- Update to 1.40 |
1.38 01 Apr 2008 11:28:22 |
clsung |
- Update to 1.38 |
1.37 05 Jan 2008 06:35:37 |
clsung |
- Update to 1.37
Changes: |
1.36 02 Jul 2007 08:12:18 |
clsung |
- Update to 1.36 |
1.35 05 Mar 2007 02:58:52 |
clsung |
- Update to 1.35 |
1.33 27 Sep 2006 01:31:40 |
clsung |
- Update to 1.33
PR: ports/103689
Submitted by: Gea-Suan Lin <gslin_AT_gslin dot org> |
1.32 17 Sep 2006 18:37:15 |
kris |
Now builds on amd64 |
1.32 25 Jun 2006 15:04:18 |
clsung |
- Update to 1.32
PR: ports/99332
Submitted by: aaron |
1.31 16 Mar 2006 02:34:04 |
clsung |
- update to 1.31
- try to satisfy portlint |
1.30 22 Jan 2006 08:30:12 |
edwin |
SHA256ify
Approved by: krion@ |
1.30 22 Jan 2006 01:48:34 |
edwin |
Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry
Approved by: krion@
PR: ports/88711 (related) |
1.30 01 Nov 2005 08:18:18 |
clsung |
- update to 1.30 |
1.29 21 Sep 2005 19:31:43 |
fenner |
search.cpan.org redirect reduction canonicalization project, pass 1:
URLs automatically rewritten from /search?dist=Foo or /dist/Foo
to /dist/Foo/ (note trailing slash). After a 2002(!) reorganization,
this is the preferred way to refer to modules on search.cpan.org.
This pass brought to you by http://people.freebsd.org/~fenner/fix-search |
1.29 05 May 2005 11:53:55 |
clsung |
- update to 1.29 |
1.28 25 Feb 2005 02:54:46 |
clsung |
- update to 1.28 |
1.27 20 Aug 2004 02:56:44 |
clsung |
My territory, suggested by ijliao. :p
Approved by: vanilla (co-mentor) |
1.27 23 Jun 2004 12:26:44 |
krion |
Update to 1.27
PR: ports/68228
Submitted by: maintainer |
1.26 30 May 2004 06:59:17 |
kris |
BROKEN on amd64: Does not build (needs to build shared libraries with -fPIC) |
1.26 21 May 2004 08:32:14 |
krion |
Add p5-Algorithm-Cluster 1.26,
This module is an interface to the C Clustering Library, a
general purpose library implementing functions for hierarchical
clustering (pairwise simple, complete, average, and centroid
linkage), along with k-means and k-medians clustering, and 2D
self-organizing maps. The library is distributed along with
Cluster 3.0, an enhanced version of the famous Cluster program
originally written by Michael Eisen while at Stanford
University. The C clustering library was written by Michiel de
Hoon.
PR: ports/66970
Submitted by: Cheng-Lung Sung <clsung@dragon2.net> |