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Port details
py-anndata Annotated data
0.11.1 devel on this many watch lists=2 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.11.1Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2023-04-18 18:09:13
Last Update: 2024-11-21 13:38:04
Commit Hash: 4865503
People watching this port, also watch:: jdictionary, py311-Automat, py311-python-gdsii, py39-PyOpenGL, p5-Sane
Also Listed In: python
License: BSD3CLAUSE
WWW:
https://anndata.readthedocs.io/en/latest/
https://github.com/scverse/anndata
Description:
anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.
HomepageHomepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}anndata>0:devel/py-anndata@${PY_FLAVOR}
To install the port:
cd /usr/ports/devel/py-anndata/ && make install clean
To add the package, run one of these commands:
  • pkg install devel/py-anndata
  • pkg install py311-anndata
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py311-anndata listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py311-anndata
Package flavors (<flavor>: <package>)
  • py311: py311-anndata
distinfo:
TIMESTAMP = 1731679222 SHA256 (anndata-0.11.1.tar.gz) = 36bff9a85276fc5f1b9fd01f15aff9aa49408129985f42e0fca4e2c5b7fa909f SIZE (anndata-0.11.1.tar.gz) = 535321

Packages (timestamps in pop-ups are UTC):
py39-anndata
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--------
FreeBSD:13:quarterly------0.10.3-
FreeBSD:14:latest--------
FreeBSD:14:quarterly------0.10.3-
FreeBSD:15:latest--n/a-n/a-0.10.30.10.5
 

py311-anndata
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.11.10.11.1-0.11.10.11.1---
FreeBSD:13:quarterly0.11.10.11.1-0.10.90.11.1---
FreeBSD:14:latest0.11.10.11.1-0.11.10.11.1---
FreeBSD:14:quarterly0.11.10.11.1-0.11.10.11.1---
FreeBSD:15:latest0.11.10.11.1n/a0.11.1n/a---
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py311-hatch-vcs>=0 : devel/py-hatch-vcs@py311
  2. py311-hatchling>=0 : devel/py-hatchling@py311
  3. python3.11 : lang/python311
  4. py311-build>=0 : devel/py-build@py311
  5. py311-installer>=0 : devel/py-installer@py311
Test dependencies:
  1. python3.11 : lang/python311
Runtime dependencies:
  1. py311-array-api-compat>=1.4 : devel/py-array-api-compat@py311
  2. py311-h5py>=3.6 : science/py-h5py@py311
  3. py311-natsort>=0 : devel/py-natsort@py311
  4. py311-numpy>=1.23,1 : math/py-numpy@py311
  5. py311-packaging>=20.0 : devel/py-packaging@py311
  6. py311-pandas>=1.4,1 : math/py-pandas@py311
  7. py311-scipy>=1.8 : science/py-scipy@py311
  8. python3.11 : lang/python311
This port is required by:
for Build
  1. math/py-mnnpy
for Run
  1. math/py-mnnpy

Configuration Options:
No options to configure
Options name:
devel_py-anndata
USES:
python:3.10+
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/a/anndata/
  2. https://pypi.org/packages/source/a/anndata/
Collapse this list.
Port Moves
  • port moved here from misc/py-anndata on 2023-07-30
    REASON: Removed duplicate

Number of commits found: 17

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.11.1
21 Nov 2024 13:38:04
commit hash: 4865503a9f467f82f5ae4ee86783cb21a5918e4bcommit hash: 4865503a9f467f82f5ae4ee86783cb21a5918e4bcommit hash: 4865503a9f467f82f5ae4ee86783cb21a5918e4bcommit hash: 4865503a9f467f82f5ae4ee86783cb21a5918e4b files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
devel/py-anndata: Update to 0.11.1

Changes:	https://github.com/scverse/anndata/tree/main/docs/release-notes
		https://anndata.readthedocs.io/en/latest/release-notes/index.html
0.10.9
08 Sep 2024 18:37:16
commit hash: c4fb5f234dfaadeb405b9b70f043fe7ed2e814f5commit hash: c4fb5f234dfaadeb405b9b70f043fe7ed2e814f5commit hash: c4fb5f234dfaadeb405b9b70f043fe7ed2e814f5commit hash: c4fb5f234dfaadeb405b9b70f043fe7ed2e814f5 files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
devel/py-anndata: Update to 0.10.9

Changes:	https://github.com/scverse/anndata/tree/main/docs/release-notes
		https://anndata.readthedocs.io/en/latest/release-notes/index.html
0.10.8
06 Jul 2024 16:03:04
commit hash: 07b5a3b2bbd7474345ea9539e249eb0d52754630commit hash: 07b5a3b2bbd7474345ea9539e249eb0d52754630commit hash: 07b5a3b2bbd7474345ea9539e249eb0d52754630commit hash: 07b5a3b2bbd7474345ea9539e249eb0d52754630 files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
devel/py-anndata: Update to 0.10.8

Changes:	https://github.com/scverse/anndata/tree/main/docs/release-notes
		https://anndata.readthedocs.io/en/latest/release-notes/index.html
0.10.7
10 Apr 2024 09:36:14
commit hash: ae2581479fdbcea1f2bdace457dbc3bef9e07da2commit hash: ae2581479fdbcea1f2bdace457dbc3bef9e07da2commit hash: ae2581479fdbcea1f2bdace457dbc3bef9e07da2commit hash: ae2581479fdbcea1f2bdace457dbc3bef9e07da2 files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
devel/py-anndata: Update to 0.10.7

Changes:	https://github.com/scverse/anndata/tree/main/docs/release-notes
		https://anndata.readthedocs.io/en/latest/release-notes/index.html
0.10.6
08 Apr 2024 12:37:28
commit hash: 0a4260b3a1a599e94eca7a85d38f97214fb4606ecommit hash: 0a4260b3a1a599e94eca7a85d38f97214fb4606ecommit hash: 0a4260b3a1a599e94eca7a85d38f97214fb4606ecommit hash: 0a4260b3a1a599e94eca7a85d38f97214fb4606e files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
Mk/Uses/python.mk: Introduce PY_EXCEPTIONGROUP

The minimal version is set to 1.1.1 because it is required by devel/py-cattrs.
Convert ports to use PY_EXCEPTIONGROUP to simplify Makefile.

With hat:	python
0.10.6
05 Apr 2024 00:39:32
commit hash: 2b135c2d3036fd82fe0bd2e0655863fdc79f39aacommit hash: 2b135c2d3036fd82fe0bd2e0655863fdc79f39aacommit hash: 2b135c2d3036fd82fe0bd2e0655863fdc79f39aacommit hash: 2b135c2d3036fd82fe0bd2e0655863fdc79f39aa files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
devel/py-anndata: Update to 0.10.6

Changes:	https://github.com/scverse/anndata/tree/main/docs/release-notes
		https://anndata.readthedocs.io/en/latest/release-notes/index.html
0.10.5
21 Feb 2024 15:07:11
commit hash: 7fe3352f15a86b173c12e52cecf40eb64688c6f9commit hash: 7fe3352f15a86b173c12e52cecf40eb64688c6f9commit hash: 7fe3352f15a86b173c12e52cecf40eb64688c6f9commit hash: 7fe3352f15a86b173c12e52cecf40eb64688c6f9 files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
devel/py-anndata: Update to 0.10.5.post1

Changes:	https://github.com/scverse/anndata/tree/main/docs/release-notes
		https://anndata.readthedocs.io/en/latest/release-notes/index.html
0.10.3
02 Nov 2023 07:37:23
commit hash: ef6c91eff5d6661995c75152c5b0816a8dbd6f82commit hash: ef6c91eff5d6661995c75152c5b0816a8dbd6f82commit hash: ef6c91eff5d6661995c75152c5b0816a8dbd6f82commit hash: ef6c91eff5d6661995c75152c5b0816a8dbd6f82 files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
devel/py-anndata: Update to 0.10.3

Changes:	https://github.com/scverse/anndata/tree/main/docs/release-notes
		https://anndata.readthedocs.io/en/latest/release-notes/index.html
0.10.2
16 Oct 2023 15:59:45
commit hash: 177178f817692feaad11d52e3770701b3cdc23a5commit hash: 177178f817692feaad11d52e3770701b3cdc23a5commit hash: 177178f817692feaad11d52e3770701b3cdc23a5commit hash: 177178f817692feaad11d52e3770701b3cdc23a5 files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
devel/py-anndata: Update to 0.10.2

Changes:	https://github.com/scverse/anndata/tree/main/docs/release-notes
		https://anndata.readthedocs.io/en/latest/release-notes/index.html
0.10.1
11 Oct 2023 12:57:44
commit hash: 816a870559627965eee4669efc19918c3e9ff565commit hash: 816a870559627965eee4669efc19918c3e9ff565commit hash: 816a870559627965eee4669efc19918c3e9ff565commit hash: 816a870559627965eee4669efc19918c3e9ff565 files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
devel/py-anndata: Update to 0.10.1

Changes:	https://github.com/scverse/anndata/tree/main/docs/release-notes
		https://anndata.readthedocs.io/en/latest/release-notes/index.html
0.10.0
08 Oct 2023 11:54:48
commit hash: b73df4d1fd1382a60995c0cab7866a8a9efab919commit hash: b73df4d1fd1382a60995c0cab7866a8a9efab919commit hash: b73df4d1fd1382a60995c0cab7866a8a9efab919commit hash: b73df4d1fd1382a60995c0cab7866a8a9efab919 files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
devel/py-anndata: Update to 0.10.0

Changes:	https://github.com/scverse/anndata/tree/main/docs/release-notes
		https://anndata.readthedocs.io/en/latest/release-notes/index.html
0.9.2
16 Aug 2023 18:25:22
commit hash: 7ae1f4cb23cf01b06bbcf9a6624f281e52f2552fcommit hash: 7ae1f4cb23cf01b06bbcf9a6624f281e52f2552fcommit hash: 7ae1f4cb23cf01b06bbcf9a6624f281e52f2552fcommit hash: 7ae1f4cb23cf01b06bbcf9a6624f281e52f2552f files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
devel/py-anndata: Update to 0.9.2

Changes:	https://github.com/scverse/anndata/tree/main/docs/release-notes
		https://anndata.readthedocs.io/en/latest/release-notes/index.html
0.9.1_2
27 Jun 2023 19:34:34
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb files touched by this commit
Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
0.9.1_2
07 May 2023 16:03:45
commit hash: c63ced8a896b8391ba7ef60a8b18a9e793a1800ccommit hash: c63ced8a896b8391ba7ef60a8b18a9e793a1800ccommit hash: c63ced8a896b8391ba7ef60a8b18a9e793a1800ccommit hash: c63ced8a896b8391ba7ef60a8b18a9e793a1800c files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
devel/py-anndata: Revert 71405986885d014b2a00340546570dbd930dd4f1

- Bump PORTREVISION for dependency change

The missing tzdata comes from pandas, not anndata itself.

PR:		271110
Reference:	https://github.com/pandas-dev/pandas/blob/v2.0.1/pyproject.toml#L31
0.9.1_1
05 May 2023 12:19:02
commit hash: 71405986885d014b2a00340546570dbd930dd4f1commit hash: 71405986885d014b2a00340546570dbd930dd4f1commit hash: 71405986885d014b2a00340546570dbd930dd4f1commit hash: 71405986885d014b2a00340546570dbd930dd4f1 files touched by this commit
Wen Heping (wen) search for other commits by this committer
devel/py-anndata: Fix build with py-pandas-2.0

Approved by:	portmgr@(blanket)
0.9.1_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
0.9.1
18 Apr 2023 18:00:40
commit hash: 9e1851791078cb61becf7daeec1ff3f9926d1019commit hash: 9e1851791078cb61becf7daeec1ff3f9926d1019commit hash: 9e1851791078cb61becf7daeec1ff3f9926d1019commit hash: 9e1851791078cb61becf7daeec1ff3f9926d1019 files touched by this commit
Po-Chuan Hsieh (sunpoet) search for other commits by this committer
devel/py-anndata: Add py-anndata 0.9.1

anndata is a Python package for handling annotated data matrices in memory and
on disk, positioned between pandas and xarray. anndata offers a broad range of
computationally efficient features including, among others, sparse data support,
lazy operations, and a PyTorch interface.

Number of commits found: 17