This package implements the fast cross-validation via sequential
testing (CVST) procedure. CVST is an improved cross-validation
procedure which uses non-parametric testing coupled with sequential
analysis to determine the best parameter set on linearly increasing
subsets of the data. By eliminating underperforming candidates
quickly and keeping promising candidates as long as possible, the
method speeds up the computation while preserving the capability
of a full cross-validation. Additionally to the CVST the package
contains an implementation of the ordinary k-fold cross-validation
with a flexible and powerful set of helper objects and methods to
handle the overall model selection process. The implementations of
the Cochran's Q test with permutations and the sequential testing
framework of Wald are generic and can therefore also be used in
other contexts.
*/R-cran-*: Remove redundant BUILD_DEPENDS
Mk/Uses/cran.mk unconditionally sets NO_BUILD, so nothing runs during
the build phase. The real work, R CMD INSTALL, happens in do-install
when run dependencies have already been installed. Listing R-cran-*
packages in BUILD_DEPENDS, with or without cran:compiles, only installs
these dependencies earlier.
While here:
- math/R-cran-Amelia: move rlang, an Import that was only listed in
BUILD_DEPENDS, to RUN_DEPENDS. Bump PORTREVISION.
- math/R-cran-MatchIt: likewise for rlang; drop chk, which 4.8.1 no
longer imports; bump PORTREVISION.
- textproc/R-cran-openxlsx, textproc/R-cran-readxl: drop knitr from
BUILD_DEPENDS. It is only a vignette builder and CRAN tarballs ship
built vignettes.
Reviewed by: dteske, eduardo, longros, uzsolt
Sponsored by: The FreeBSD Foundation
Differential Revision: https://reviews.freebsd.org/D60835
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
- Add new port: math/R-cran-CVST
This package implements the fast cross-validation via sequential
testing (CVST) procedure. CVST is an improved cross-validation
procedure which uses non-parametric testing coupled with sequential
analysis to determine the best parameter set on linearly increasing
subsets of the data. By eliminating underperforming candidates
quickly and keeping promising candidates as long as possible, the
method speeds up the computation while preserving the capability
of a full cross-validation. Additionally to the CVST the package
contains an implementation of the ordinary k-fold cross-validation
with a flexible and powerful set of helper objects and methods to
handle the overall model selection process. The implementations of
the Cochran's Q test with permutations and the sequential testing
framework of Wald are generic and can therefore also be used in
other contexts.
WWW: https://cran.r-project.org/web/packages/CVST/
