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Port details
R-cran-corpcor Efficient estimation of covariance and partial correlation
1.6.10 mathnew! Σ=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Package not present on quarterly.This port was created during this quarter. It will be in the next quarterly branch but not the current one.
Maintainer: longros@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2026-11-11 12:12:12
Last Update: 2026-11-11 12:07:23
Commit Hash: 0638970
License: GPLv3+
WWW:
https://strimmerlab.github.io/software/corpcor/
Description: #
Implements a James-Stein-type shrinkage estimator for the covariance matrix, with separate shrinkage for variances and correlations. The approach is both computationally as well as statistically very efficient, it is applicable to "small n, large p" data, and always returns a positive definite and well-conditioned covariance matrix. In addition to inferring the covariance matrix the package also provides shrinkage estimators for partial correlations and partial variances. The inverse of the covariance and correlation matrix can be efficiently computed, as well as any arbitrary power of the shrinkage correlation matrix. Furthermore, functions are available for fast singular value decomposition, for computing the pseudoinverse, and for checking the rank and positive definiteness of a matrix.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port
Manual pages: #
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist #
Expand this list (4 items)
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  1. /usr/local/share/licenses/R-cran-corpcor-1.6.10/catalog.mk
  2. /usr/local/share/licenses/R-cran-corpcor-1.6.10/LICENSE
  3. /usr/local/share/licenses/R-cran-corpcor-1.6.10/GPLv3+
  4. share/sbom/pc/R-cran-corpcor.pc
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USE_RC_SUBR (Service Scripts)
  • no SUBR information found for this port
Dependency lines:
  • R-cran-corpcor>0:math/R-cran-corpcor
To install the port: #
cd /usr/ports/math/R-cran-corpcor/ && make install clean
To add the package, run one of these commands:
  • pkg install math/R-cran-corpcor
  • pkg install R-cran-corpcor
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: R-cran-corpcor
Flavors: #
there is no flavor information for this port.
distinfo: #
TIMESTAMP = 1784139308 SHA256 (corpcor_1.6.10.tar.gz) = 71a04c503c93ec95ddde09abe8c7ddeb36175b7da76365a14b27066383e10e09 SIZE (corpcor_1.6.10.tar.gz) = 22678

No package information for this port in our database #
Sometimes this happens. Not all ports have packages. This is doubly so for new ports, like this one.
Dependencies #
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies: #
  1. R : math/R
Runtime dependencies: #
  1. R : math/R
There are no ports dependent upon this port #

Configuration Options: #
No options to configure
Options name: #
math_R-cran-corpcor
USES: #
cran:auto-plist
pkg-message: #
FreshPorts was unable to extract/find any pkg message
Master Sites: #
Expand this list (14 items)
Collapse this list.
  1. http://cran.utstat.utoronto.ca/src/contrib/
  2. http://cran.utstat.utoronto.ca/src/contrib/Archive/corpcor/
  3. https://cloud.r-project.org/src/contrib/
  4. https://cloud.r-project.org/src/contrib/Archive/corpcor/
  5. https://cran.csiro.au/src/contrib/
  6. https://cran.csiro.au/src/contrib/Archive/corpcor/
  7. https://cran.ma.imperial.ac.uk/src/contrib/
  8. https://cran.ma.imperial.ac.uk/src/contrib/Archive/corpcor/
  9. https://mirror.las.iastate.edu/CRAN/src/contrib/
  10. https://mirror.las.iastate.edu/CRAN/src/contrib/Archive/corpcor/
  11. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/
  12. https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/Archive/corpcor/
  13. https://stat.ethz.ch/CRAN/src/contrib/
  14. https://stat.ethz.ch/CRAN/src/contrib/Archive/corpcor/
Collapse this list.

Number of commits found: 1 #

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.6.10
11 Nov 2026 12:07:23
commit hash: 063897007938f0197bc65b24f445599f0d5e83bfcommit hash: 063897007938f0197bc65b24f445599f0d5e83bfcommit hash: 063897007938f0197bc65b24f445599f0d5e83bfcommit hash: 063897007938f0197bc65b24f445599f0d5e83bf files touched by this commit
Christos Longros (longros) search for other commits by this committer
math/R-cran-corpcor: New port: Efficient estimation of covariance and partial
correlation

Implements a James-Stein-type shrinkage estimator for the covariance
matrix, with separate shrinkage for variances and correlations. The
approach is both computationally as well as statistically very efficient,
it is applicable to "small n, large p" data, and always returns a positive
definite and well-conditioned covariance matrix. In addition to inferring
the covariance matrix the package also provides shrinkage estimators for
partial correlations and partial variances. The inverse of the covariance
and correlation matrix can be efficiently computed, as well as any
arbitrary power of the shrinkage correlation matrix. Furthermore,
functions are available for fast singular value decomposition, for
computing the pseudoinverse, and for checking the rank and positive
definiteness of a matrix.

PR:		296812
Approved by:	jrm (mentor)
Differential Revision:	https://reviews.freebsd.org/D61259

Number of commits found: 1